| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BCI_0193 |
|---|
| Symbol | rluD |
|---|
| ID | 4056439 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Baumannia cicadellinicola str. Hc (Homalodisca coagulata) |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007984 |
|---|
| Strand | + |
|---|
| Start bp | 205192 |
|---|
| End bp | 206151 |
|---|
| Gene Length | 960 bp |
|---|
| Protein Length | 319 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 37% |
|---|
| IMG OID | 637981547 |
|---|
| Product | ribosomal large subunit pseudouridine synthase D |
|---|
| Protein accession | YP_588650 |
|---|
| Protein GI | 94676946 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
|---|
| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.341047 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCACCAC AATACCTAAA TATTACAGAA CAAGTTCCTC ATATACTATT TCCACAGCGC
TTAGATCAAG CTATAGCTAA ATTATTAGCG GATTATTCAC GCTCACAAAT TAAAGGCTGG
ATATTAGAGG GAAAAGTCAA AGTAAATGAT CAGGTAACTA TTCTTCCGAA TAAAAAAATA
CTAGGTGGAG AAATAATTAA AATATCGGTA ATGATAGAAA GAGAACATGA ACAGTACTGG
AAAGCGCAGA ATATTGCTTT AAATATTGTT TATGAGGATG ATGATATAAT AGTAATTAAT
AAACCACGAG ATATGGTGGT ACACTCAGGT GCTGGGAATC TCGACGGCAC CATACTAAAT
GCCTTGCTGT ATTATTACCC AGCTATTGCT AATGTACCAC GCGCAGGCAT CGTTCATAGG
TTAGACAAAA ATACTACAGG TTTAATGATA GTAGGTAAAA CACTATCGGC ACAAACTAAG
TTAGTAGAAT TATTACGCAC ACGGAGTATC ATTCGTGAAT ACGAAGCGAT AACTATTGGT
ATTATTAATA ACGATGGTAC TGTTGAACAG CCAATTGCTC GCCATGCTAC TAAGCGAACT
CATATGACAG TAAATCCTCT AGGTAAACCA GCTATTACAC ATTACAGTAT TATAGAGCGT
TTTCGTGCTC ATACTCGACT ACGGCTGAGA TTAGAAACAG GTCGTACCCA TCAGATTCGC
GTACATATGG CCTATATGAA TCACCATTTA GTTGGCGATC AATTGTATCG TAGTAGTCAG
CAAAATCATC ACAGTAATAT AGAAGTGTTA CGTCGGTTTA ATCGCCAAGC ATTACATGCA
ACTACATTAC GATTACACCA TCCAATTACA GCAAGAGAAA TGGAGTTGCA TGCAGCACTA
CCGCAAGATA TGGTCGAATT AGTTAATGCA CTTCAAGAGG ATAGGAAAAA TTTTCTTTAA
|
|---|
| Protein sequence | MAPQYLNITE QVPHILFPQR LDQAIAKLLA DYSRSQIKGW ILEGKVKVND QVTILPNKKI
LGGEIIKISV MIEREHEQYW KAQNIALNIV YEDDDIIVIN KPRDMVVHSG AGNLDGTILN
ALLYYYPAIA NVPRAGIVHR LDKNTTGLMI VGKTLSAQTK LVELLRTRSI IREYEAITIG
IINNDGTVEQ PIARHATKRT HMTVNPLGKP AITHYSIIER FRAHTRLRLR LETGRTHQIR
VHMAYMNHHL VGDQLYRSSQ QNHHSNIEVL RRFNRQALHA TTLRLHHPIT AREMELHAAL
PQDMVELVNA LQEDRKNFL
|
|---|
| |