| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_5914 |
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| Symbol | ligT |
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| ID | 4042778 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cupriavidus metallidurans CH34 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007974 |
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| Strand | + |
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| Start bp | 115839 |
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| End bp | 116405 |
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| Gene Length | 567 bp |
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| Protein Length | 188 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 637981333 |
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| Product | 2,5 RNA ligase |
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| Protein accession | YP_588042 |
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| Protein GI | 94314833 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1514] 2'-5' RNA ligase |
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| TIGRFAM ID | [TIGR02258] 2'-5' RNA ligase |
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Plasmid Coverage information |
| Num covering plasmid clones | 43 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.720477 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | GTGGCGCGTC TGTTCGTCGC CATCCAGCCT CCCGCCGCGC TGGTGGCCGA CCTGCTGCGC
ATCGTTCCCG CACAGCACGG CATTCGGCCG ACGATGGCCG CGCAGTTGCA CCTGACCCTG
CGCTTTCTGG GCGAGCAGGA TGACCCCACG GCGGTGCGGA TTGAACGGGT GTTGTCCGAG
GTAGCTGCGC CGTCCGTGGT GTTGCAGGTG AAGGGTGTCG GCCGCTTTCG TGGCCGCCAG
GGCGCCATAC TCTGGGCCGG GCTGGAGGCG TCGGCGCCGA TGCAGGCGTT GGTCGACGCC
ATCACCGCCG CGCTGGAGCG CGAAGGGATT CCACCCGAGC GCCGCCGCTT CTGGCCACAT
TTGACCCTGG CACGTTGCCG GCCTGAGGTG CCGGAGCATG TACTGCGGGA CTGGCTGGCG
GCCCGTCGGG CACTGTCGCT GCCTGCCTGC ACGATCGACC GGTTCGTCCT GTTCGAGAGC
GTGCTTGACC GACAGGGCGC GCGGCATGTG GCGCGGGCCG TCTATCCACT TGTCGCGAAC
GGTCCAGACC GCTGCCCCCA ACGCTGA
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| Protein sequence | MARLFVAIQP PAALVADLLR IVPAQHGIRP TMAAQLHLTL RFLGEQDDPT AVRIERVLSE
VAAPSVVLQV KGVGRFRGRQ GAILWAGLEA SAPMQALVDA ITAALEREGI PPERRRFWPH
LTLARCRPEV PEHVLRDWLA ARRALSLPAC TIDRFVLFES VLDRQGARHV ARAVYPLVAN
GPDRCPQR
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