| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_5912 |
|---|
| Symbol | |
|---|
| ID | 4042776 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cupriavidus metallidurans CH34 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007974 |
|---|
| Strand | + |
|---|
| Start bp | 113774 |
|---|
| End bp | 115276 |
|---|
| Gene Length | 1503 bp |
|---|
| Protein Length | 500 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 637981331 |
|---|
| Product | transcriptional regulator Ada / DNA-3-methyladenine glycosylase II / DNA-O6-methylguanine--protein-cysteine S-methyltransferase |
|---|
| Protein accession | YP_588040 |
|---|
| Protein GI | 94314831 |
|---|
| COG category | [F] Nucleotide transport and metabolism
[L] Replication, recombination and repair |
|---|
| COG ID | [COG0122] 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase
[COG2169] Adenosine deaminase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.838028 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAACTCG ATCCTGACAC CTGCTACAAG GCCGTGGCCT CGCATGACCG GCGCTTCGAC
GGACGCTTCT TCGTCGGGGT GTCGTCGACG GGCGTGTACT GCCGGCCGAT TTGCGCCGTG
CGCACGCCCA AGCGCGAGAA CTGCACGTTC TACGAGACCG CCGCCGCCGC GGAGAAACAC
GGCTTCAGGC CTTGTCTGCG TTGTCGCCCG GAATTGGCGC CGGGGCATGG GCTGGCGGAC
ATCTCCGGCC GGCTGGCGCA GGCGGCCGCC ACGTTGATCG ACGAAGGCTT CATGGCCGGC
GCGGGCGTGG CCCAGCTGGC CGCGCGGATC GGTGTGACCG AGCGTCACCT GCGCCGCCTG
TTCGATGCCG AGTTCGGCGT GTCGGTGCAT GAGTACGCCC AGACGCAAAA GCTACTGCTG
GCCAAGCGCC TGCTGACAGA CACCGCGCTG CCCGTCACCG AGGTGGCGCT GGCAGCCGGC
TTTGGCAGCG TGCGGCGGTT CAACGACGTG CTCAAGGAAC GCTATGGCCT GACGCCGCTG
GCGATGCGCA AGCGCGCCGC AGATGGCATG GCGGACCGGC TCGTGTTCGA GCTCGGCTAC
CGGCCGCCGA TGGCGTGGGG GGCGCTGCTC GGATTTCTGG CCGTGCGTGC CGTCGACGGC
ATCGAACAAT GTGATGGCGA GGTGTACTCG CGCACGTTGT CGATCGAAGC GGGTGGCCGG
TGTCATGCGG GCTGCGTGCG GCTCGAGCAT GTGGCGCGGC GCGCGGTGCT GCGCATCACG
TTGTCCGGCG CGTTGGCGCC CGTGATTCCG CAGGCATTGG GCAAGGTCCG GCGGTTATGC
GATTTGGGCT GTCGCCCCGA CATCGTCGAT GCCCACCTGG GCGAACTGGC TGCGCGGACG
CCTGGAATGC GCCTGCCCGG CGCGTTCGAC GGATTCGAGA TCGGGGTGCG CGCGATCGTC
GGTCAGGTGA TTCCGGTGGT GCAGGCGCGG CGCATTCTGG CTCGGCTGGC GCAGGTGGCC
GGCGAGCCGT TGCCGGAAGC GGCCCAGGCG GGACTGACCA CGCCTGCCGG CCAGGCGCCG
CTGACTCACG CCTTCCCGAC CGCGCAGGCT CTGGCTGCAT TGCCCGACGA GGCATATCGG
GCGGCTGGCG TGACCGCCGC GAAGACCCGG ACGATTCGTG CGTTGGCCCG CAGCGTGGCT
GCCCATGAAA TCGATCTCGA TCCCCACGCG CCACCTGAGG TGACCGTGGC GCAATTGCGT
GCCATCGATG GCATCGGAGA CTGGACGGCG CAATACGTCG CAATGCGCGC GTTAGGCTGG
CCTGACGCAT TTCCGGGCAC CGACTATGCG CTGCGCAAGG TGCTGGGCGT CGATACGGTT
CGCGGGATGC AGGCGAAGAC CGCCGGATGG GCGCCGTGGC GCGCCTATGC GGCAATCCAT
CTCTGGCACC GCTACGAAGC GCTGAAGCTT CAGGGTAGCG ATATCGAGGA GCAGGCGGCA
TGA
|
|---|
| Protein sequence | MELDPDTCYK AVASHDRRFD GRFFVGVSST GVYCRPICAV RTPKRENCTF YETAAAAEKH
GFRPCLRCRP ELAPGHGLAD ISGRLAQAAA TLIDEGFMAG AGVAQLAARI GVTERHLRRL
FDAEFGVSVH EYAQTQKLLL AKRLLTDTAL PVTEVALAAG FGSVRRFNDV LKERYGLTPL
AMRKRAADGM ADRLVFELGY RPPMAWGALL GFLAVRAVDG IEQCDGEVYS RTLSIEAGGR
CHAGCVRLEH VARRAVLRIT LSGALAPVIP QALGKVRRLC DLGCRPDIVD AHLGELAART
PGMRLPGAFD GFEIGVRAIV GQVIPVVQAR RILARLAQVA GEPLPEAAQA GLTTPAGQAP
LTHAFPTAQA LAALPDEAYR AAGVTAAKTR TIRALARSVA AHEIDLDPHA PPEVTVAQLR
AIDGIGDWTA QYVAMRALGW PDAFPGTDYA LRKVLGVDTV RGMQAKTAGW APWRAYAAIH
LWHRYEALKL QGSDIEEQAA
|
|---|
| |