| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_5794 |
|---|
| Symbol | |
|---|
| ID | 4042658 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cupriavidus metallidurans CH34 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007974 |
|---|
| Strand | + |
|---|
| Start bp | 2550556 |
|---|
| End bp | 2551953 |
|---|
| Gene Length | 1398 bp |
|---|
| Protein Length | 465 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 637981213 |
|---|
| Product | GntR family transcriptional regulator |
|---|
| Protein accession | YP_587922 |
|---|
| Protein GI | 94314713 |
|---|
| COG category | [E] Amino acid transport and metabolism
[K] Transcription |
|---|
| COG ID | [COG1167] Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.0227709 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.15383 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCGTACAA AGACATCCGC GCTTACAGGC AAGCCGGCCT GGATCGGCGA GTTCAGCCCG
ACCGGCGGGC CGCGCTATCT GCAGATCGCG GGATTCCTCG AACACGCGGT GGCGGACGGG
CGGCTCTCTC CCGGGGACCG GCTGGCGCCT CAGCGAGAAC TGGCAGCAAT GCTTGGCGTG
GACCTGACCA CGGTGACGCG GGCGCTGGCC GAGGCGCGGC GCCGCCGGCT GGTCGAACCA
CGCGGCTCGC TCGGCACCTT CGTCGCCGCG CCGGTCTTCG AACTGGCCCA GACTGTGGAC
CTGAGCATGA ACGTGCCACC ACCGCCGGAG AGCATCGACT TCGACGACAT GCTCCGGCGC
GGGTTGGCGC AGGTGACGCT GCACGCGGAC GCCAGCCTGT TAATGACCTA CCAGTTGGGC
GGCGGCACCC AGCCGGATCG CGAAGCCGGT GCGCGGTGGC TCGGACCGAT GCTTGGAACG
GTAGCGTCCT CACGCGTGAT CGCCAGTCCC GGCGCCCAAT CGGCGTTGTC GGCAGTGATC
CTCAGCCTCA GCGACCCCCG GTCAGTCATC GCGGCGGAGC CGCTGATCTA TCCGGGGCTG
CGCGCGGCGG CGGCGCAAAC GGGGCGGCGC GTGGTGACGG TGGCGACAGA TGACGACGGA
ATGCGCCCCG ACGCGCTCGA GGCCGCTTGC CGCGCGCACG CGATTCGGCT CATCTACCTG
AACCCGACGC TGCAGAATCC CACCACGCAC ACGATGCCCG AGCACCGTCG GCGTGACATC
GCACGGGTGG CCGCCCGGTG CGGCGCGCGG ATCATCGAGG ACGACCCGTA CTGGCTGCTC
ACGCCCGACG CGCCGCCCCC GGTGGCCGCA CTCGCGCCGG CGCAAACGAT TCATATCGCG
ACCCTGTCGA AATGCCTGAG CCCCGGATTG CGCACCGCAT ACGTGGTGGC GCCCGATGTC
GACACGCAGG AATTGATTCT GGCCGCGCTA CGCGCGATCA CCCTCATGGC GTCGCCGATT
GCCACCGCGC TTGCCACGCA GTGGATTCGC GATGGGTCCG CCGAGGCATT GCTGAACGGC
ATTCGCAGCG AAGCGGCGGC GCGGCAGCAG ATGGCGCGGC AATGGCTGAT CGGTGCAGAC
CAGTCGCCGC AATCTGGCAT CCATGTGTGG CACCCGTTGC CAAGTTACTG GACGTCGAGC
GGATTCAGCC GCGCGGCCAG CGACGAGCAC CTGCGGGTGA CCGCATCGGA TGCGTTTTCC
GATGGAGCCG ATGCGCCCAA CGCCATTCGT ATATCGCTCG GCGGCGTGGC GGAGCGCGCG
CAGCTTTCGA TGGCGCTCAA GAAACTGTCG GGGTTGCTCG CACGCAAGCC GCCACACGCA
ATGCTGCAGG TGATCTAG
|
|---|
| Protein sequence | MRTKTSALTG KPAWIGEFSP TGGPRYLQIA GFLEHAVADG RLSPGDRLAP QRELAAMLGV
DLTTVTRALA EARRRRLVEP RGSLGTFVAA PVFELAQTVD LSMNVPPPPE SIDFDDMLRR
GLAQVTLHAD ASLLMTYQLG GGTQPDREAG ARWLGPMLGT VASSRVIASP GAQSALSAVI
LSLSDPRSVI AAEPLIYPGL RAAAAQTGRR VVTVATDDDG MRPDALEAAC RAHAIRLIYL
NPTLQNPTTH TMPEHRRRDI ARVAARCGAR IIEDDPYWLL TPDAPPPVAA LAPAQTIHIA
TLSKCLSPGL RTAYVVAPDV DTQELILAAL RAITLMASPI ATALATQWIR DGSAEALLNG
IRSEAAARQQ MARQWLIGAD QSPQSGIHVW HPLPSYWTSS GFSRAASDEH LRVTASDAFS
DGADAPNAIR ISLGGVAERA QLSMALKKLS GLLARKPPHA MLQVI
|
|---|
| |