Gene Rmet_5685 details

Gene Information

• Locus tag: Rmet_5685
• Symbol: fimT
• ID: 4042549
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Cupriavidus metallidurans CH34
• Kingdom: Bacteria
• Replicon accession: NC_007974
• Strand: +
• Start bp: 2442838
• End bp: 2443332
• Gene Length: 495 bp
• Protein Length: 164 aa
• Translation table: 11
• GC content: 67%
• IMG OID: 637981104
• Product: Type IV pilus transmembrane protein, FimT
• Protein accession: YP_587813
• Protein GI: 94314604
• COG category: [N] Cell motility; [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG4970] Tfp pilus assembly protein FimT
• TIGRFAM ID: [TIGR02532] prepilin-type N-terminal cleavage/methylation domain

Plasmid Coverage information

• Num covering plasmid clones: 29
• Plasmid unclonability p-value: 0.695953
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 20
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGCCGAACT TCTCGCCAAC CTTGCCTGCG ACGCAGCGCG CGGCCGGCTT CACGTTGATC 
GAGCTGATGA TCACCGTGAT CGTGCTGGTG ATCGTCGTCT CCATGGCCGC GCCGGCCATG 
AGCCAGTTGA TTTCGTCGCA ACGCACCCGT AACGCCGCCG CCGATCTGGC CTCCGCCTTG 
ACCCTGACGC GCAGCGAAGC GGTCAATCGC AGTGCCACCA CAACGATGAC GGCATCCGGC 
ACCGGCGGCT CATGGACCGG TGGCTGGGCC GTGGCGGCGG GCACCGCCCG GATTCGCGGC 
TATGGCCCGT ACGACGGCAT CACCATTACC GCAAGCGGCG GAAGCTCGCT GGCCATCGGC 
AACGATGGCC GCCCCACTGC TGGCACCCAG ACATTTCAGG TAGCGCCATC CACCAATGCG 
ACCAGCGCCA CGACCGTCTG CGTCCAGGTG GGCGGCACGG GGCGCGTAAC CACCGTGAAC 
GGAACCTGCA CATGA 

 

Protein sequence

MPNFSPTLPA TQRAAGFTLI ELMITVIVLV IVVSMAAPAM SQLISSQRTR NAAADLASAL 
TLTRSEAVNR SATTTMTASG TGGSWTGGWA VAAGTARIRG YGPYDGITIT ASGGSSLAIG 
NDGRPTAGTQ TFQVAPSTNA TSATTVCVQV GGTGRVTTVN GTCT