Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rmet_5644 |
Symbol | carX |
ID | 4042508 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Cupriavidus metallidurans CH34 |
Kingdom | Bacteria |
Replicon accession | NC_007974 |
Strand | - |
Start bp | 2404916 |
End bp | 2406352 |
Gene Length | 1437 bp |
Protein Length | 478 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 637981063 |
Product | carotenoid oxygenase |
Protein accession | YP_587772 |
Protein GI | 94314563 |
COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
COG ID | [COG3670] Lignostilbene-alpha,beta-dioxygenase and related enzymes |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 30 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 0.427984 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGAAGACA GCTTGTCCGA AGTGGAAGGT GCAGCGGGTG ACGTGAGCGA CGTGAGTGAG GTGGATAACT TCGCGCCGGT CACGCAGGAA GTCGATGCAA GCGATCTCTG CGTGCGTGGC GTGTTGCCAG CGGGGTTGCA GGGCACGTTG TATCGCATCG GCCCGAACCC GCGCTTTCCG CAGCCCGAGG CGCACTGGTT CGGTGGCGAC GGCATGGTGC ATGTGTTCGC CATCGACGAT GGGCGCGTGT CCTACCGCAA CCGCTGGGTG CGCACGCCCA AGTGGCGTGA CGAGGATCGT GCCGGGCGTC CACTATTCCG CGCCTTCGCC GGCAAGTTGC CCGATGCGCC GGAGTGGTCG GGCAGCGATG GCGGCGTGGC CAATACCAAC ATCATCTGGC ACGGCGGCGC GCTGCTGGCG CTCGAGGAAG CGCACCTGCC CACTGCTGTG ACGCCGCGCG CGATCGACAC CCTTGGATAT ATGGAATACG GCCCGCTGAA GGGGCCGTTC ACCGCGCATC CGAAGACCGA CCCGCGCACT GGCGAACTAC TGTTCTTCGG CTACAACGCC GACGGCAAGC TCACGCCGGG CGTGCAGGTT GGTGCGATCG ATGCACAGGG CCGCCTGACG CATTACGCGC GTCTGCAGGC GCCGTACCCG AGCATGATCC ACGACTTCAT GGCCACGCCG GGTCATCTGT TGATCCCCGT GCTGCCGCTG ACCGGTAGCC TTGCGCGCGT GGAGCGCGGC GGCCCTGGCT ATGCATGGGA GCCAGAGAAG CCCGCCATGA TCGGCGTCCT GCCGCGTGGT GGCGGCGCTG ACGACGTGCG GTGGTTCGAG GGCCCTGCCT GCTATGTGTT CCACGTGATG AACGCGTGGG AGGAAGGCGA GGGGGGACAA CGCATTCTGG CGGACGTCAT GGTCTACGAC GAACCTCCCC TGTTCCCCCA CGCCGACGGA TCGCCAGGAG ATCCCGCCCG GCAGCAGGCG TACCTGACGC GCTGGACGTT CGATCTTGCG TCGGACATAC GCCGGTTCAC CGCCGAACGG CTCGACGATA CGGCGGGCGA GTTTCCGCGC ATCGACGACC GCGTTTCGGG TTTCCGCTAT CGGCACGGAT GGTTCGCCGC GTCGCATCCC GAGTACGGCG AAGGCGCGCT CAACGGCATC ATGCACCTGG ACATGCAGGA CGGCACGCGC GACGCCTACT GGCTGCCGCG GGGCGATATC ACGTCCGAGC CGGTGTTCGC GCCGGGTGGT GGCGCTCATG GCGGCGAGGG CGATGGCTGG CTGTTGGCGG TGGTGTGGCG GGCTGCGGCA CAATGTAGCG AATTGCTGGT GTTCGATGCG CGGCACGTCG CGCGCGGTCC GCTGGCAACC GTCGAGCTGC CGCAGCGCGT GCCGTTCGGC TTCCATGGCA ACTGGGTAGC GGGATAG
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Protein sequence | MEDSLSEVEG AAGDVSDVSE VDNFAPVTQE VDASDLCVRG VLPAGLQGTL YRIGPNPRFP QPEAHWFGGD GMVHVFAIDD GRVSYRNRWV RTPKWRDEDR AGRPLFRAFA GKLPDAPEWS GSDGGVANTN IIWHGGALLA LEEAHLPTAV TPRAIDTLGY MEYGPLKGPF TAHPKTDPRT GELLFFGYNA DGKLTPGVQV GAIDAQGRLT HYARLQAPYP SMIHDFMATP GHLLIPVLPL TGSLARVERG GPGYAWEPEK PAMIGVLPRG GGADDVRWFE GPACYVFHVM NAWEEGEGGQ RILADVMVYD EPPLFPHADG SPGDPARQQA YLTRWTFDLA SDIRRFTAER LDDTAGEFPR IDDRVSGFRY RHGWFAASHP EYGEGALNGI MHLDMQDGTR DAYWLPRGDI TSEPVFAPGG GAHGGEGDGW LLAVVWRAAA QCSELLVFDA RHVARGPLAT VELPQRVPFG FHGNWVAG
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