Gene Rmet_5400 details

Gene Information

• Locus tag: Rmet_5400
• Symbol: rpoM
• ID: 4042261
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Cupriavidus metallidurans CH34
• Kingdom: Bacteria
• Replicon accession: NC_007974
• Strand: +
• Start bp: 2128951
• End bp: 2129448
• Gene Length: 498 bp
• Protein Length: 165 aa
• Translation table: 11
• GC content: 65%
• IMG OID: 637980818
• Product: RNA polymerase sigma M factor
• Protein accession: YP_587528
• Protein GI: 94314319
• COG category: [K] Transcription
• COG ID: [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog
• TIGRFAM ID: [TIGR02937] RNA polymerase sigma factor, sigma-70 family

Plasmid Coverage information

• Num covering plasmid clones: 50
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 24
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGATTCCGG CGTTGCGCCG CTATGCCCGC GCGCTATTGC GCGAGCAGGC GGCCGCGGAC 
GATCTCGTGC AGGACTGCCT GGAAAAGGTC ATCACGTACT GGGACAGCCG CCGCAACCGC 
GCAGACACCC GTAGTTGGGT ATTCGCCATC CTGCATAACC TTGCGATGAC GGCCCTGCGC 
CGTCATGCAA GCGCGCAAGG GTTGCACGTG GCGATCGACG ACGTGGCGGA GTCCCTCATG 
ACCGTGCCGC CGGCCCAGGA AGACGCACTG CGTTATCGGG ACCTGCTGAG CGCGGTCGAT 
GCCCTTCCCG CCGAACAGCG CAGTGTGCTC CTGCTGGTCT CGGTGGAGGA GATGTCGTAC 
GCCGAGACCG CACGCATTCT TGAGATTCCC GTCGGCACCG TGATGTCGCG CCTGTCTCGC 
GCGCGGGAAA AACTACTGAG GCAGATGGAA CCCGGCCTGA AGGCGGCCCC GACATCCGGA 
CTGCGGAGGG TCAAATGA 

 

Protein sequence

MIPALRRYAR ALLREQAAAD DLVQDCLEKV ITYWDSRRNR ADTRSWVFAI LHNLAMTALR 
RHASAQGLHV AIDDVAESLM TVPPAQEDAL RYRDLLSAVD ALPAEQRSVL LLVSVEEMSY 
AETARILEIP VGTVMSRLSR AREKLLRQME PGLKAAPTSG LRRVK