| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_5365 |
|---|
| Symbol | |
|---|
| ID | 4042226 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cupriavidus metallidurans CH34 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007974 |
|---|
| Strand | + |
|---|
| Start bp | 2086671 |
|---|
| End bp | 2087573 |
|---|
| Gene Length | 903 bp |
|---|
| Protein Length | 300 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637980783 |
|---|
| Product | putative LysR family transcriptional regulator |
|---|
| Protein accession | YP_587493 |
|---|
| Protein GI | 94314284 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 0.278218 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAACCA CCATCGACGA ACTGCTGGCC TTTGCCGCAG TAGTGGACTC CGGCTCGATC
ACGGCGGCGG CCGAACAACT GGGGCTGACG ATCTCGGCCA CCAGCCGGAC CTTGAGCCGT
CTGGAGGAGA AGCTGAAGAC CACGCTGCTG CGACGAACCA CGCGGCGGCT GGAGCTGACC
GAGGAAGGCG CCGCCTTCCT GGAGCACGCG CGCGCGATCC TGGCGATGGT CGACGAAGCG
GAAGAGCAGA TGGCTGCACG GCAGATGCGA CCCGTCGGGC GCTTGCGGGT GGACGCGGCC
ACGCCGTTCA TGCTGCACGT GATCGTGCCG CTGGTGGCGG GATTCCGCGC CAGCTACCCC
GAGGTGGAAC TGGAACTGAA CTCGAACGAA GGCTTCATCG ACCTGATCGA GAAACGAACC
GACGTGGCGT TCCGCATCGG CCAGTTGAAG GACTCGACGC TGCATGCACG ACCGATCGGT
ATCAGCCAGA TCCGCGTGCT GGCCAGCCCG GAGTATCTGA AACGCCACGG CACGCCCACC
AAGCCGGCGC AACTCGCGCA ACATGCGCTG CTGGGCTTTA CCCAGCCTGA ATCACTGAAC
GACTGGCCGC TGCGCGACGA CGCCGGTGGC GTCGTGCACA TCAAGCCGAC GATTGCATCG
TCGAGCGGCG AAACGCTCAG GAGCCTGGCG CTGGCGGGCC AGGGAATCGT CTGCCTGTCG
GACTTCATGA CGCTCGAGGA CCGGCAGAGC GGGCGACTGG TGCAACTGTT TGCGAAGCAA
ACCCTGGACG TGCGCCAACC GATCAACGCG GTCTACTACC GCAACACCGC GCTGGCGTCA
CGGATCACCT GCTTTCTCGA CCACGTGGTC AGAACACTGG GCAAGCATCC GTTCGAACGG
TAG
|
|---|
| Protein sequence | MKTTIDELLA FAAVVDSGSI TAAAEQLGLT ISATSRTLSR LEEKLKTTLL RRTTRRLELT
EEGAAFLEHA RAILAMVDEA EEQMAARQMR PVGRLRVDAA TPFMLHVIVP LVAGFRASYP
EVELELNSNE GFIDLIEKRT DVAFRIGQLK DSTLHARPIG ISQIRVLASP EYLKRHGTPT
KPAQLAQHAL LGFTQPESLN DWPLRDDAGG VVHIKPTIAS SSGETLRSLA LAGQGIVCLS
DFMTLEDRQS GRLVQLFAKQ TLDVRQPINA VYYRNTALAS RITCFLDHVV RTLGKHPFER
|
|---|
| |