| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_5134 |
|---|
| Symbol | |
|---|
| ID | 4041995 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cupriavidus metallidurans CH34 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007974 |
|---|
| Strand | - |
|---|
| Start bp | 1831251 |
|---|
| End bp | 1832804 |
|---|
| Gene Length | 1554 bp |
|---|
| Protein Length | 517 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 637980552 |
|---|
| Product | acyl-CoA synthetase / AMP-dependent synthetase and ligase |
|---|
| Protein accession | YP_587262 |
|---|
| Protein GI | 94314053 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 0.93936 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGTTCG CCTACTTCCT CAGGCGCGCC GCTCGTTACT GGGGCGACAA CCCGGCCGTG
CTGTACCGGG ATCGCGTGCT GACCTATCGC CAGCTCGACA AGCGTTCCAC GCGGCTGGCG
AACGCGCTGC TGGCGCTGGG CCTGACCCGT GGCGACCGCG TGGCGATCCA GGCGCGAAAC
TGTCCGGAGA TCGTGGAGAT CGAATGCGCG CTGTACAAGG CCGGGCTGGT CAAGGCCGCG
CTGAATCCCC GTTTCACCGC CGAAGAGGCG TCGGATGTCG TGGAAAACTG CACGCCGCGC
GTGATGATCG TCGGCCCCGG CTACACGCGA TACCAGCGGG AATCACGCGG GTTCGGCTGC
GTGGAGCATT TCTTTGCGAT TGCCGGGGCG GAGGGCCAGT ACGGTGCCTA TGAAGCACTG
ATCGATGGCG GCGCCACCAC CGCCATCGAC TATGTGCCGC AGCCTGACGA CCTCGCCGTG
CTGCATTTCT CGTCGGGCTC CACCGGCAAG ATCAAGGCGG CGATGCAGAG CTATGGCAAC
CGGCTGGCGT CGATGCGCAA GATGATCCTG GGCATGGATC GCCCTGCACG CCCGGGCGAT
CGCCTGGCGT TGATCGGGCC GATTACCCAT GCGTCTGGCA TGTTGATGCA GCCGTATCTG
TTCCTTGGCG CCACGCTGGT CCTGTTCGAG AAGTTCGAGC CCGCGCACTT CCTGGCCGAG
GTGCCGCGTC TGAACCTGAC GCACGTGTTC ATGGTGCCGG CGATGATCAA CCTGCTGCTG
GCCGAGCCCA CGCTGGCCAC GGCAGACCTG AGCTGCCTGA AGACGCTGGC CTACGGCGCC
GCGCCCATGG CGCCCGCACG TATTCGCGAG GCGTGGGAAC GCATCGGCCC GATCCTGTCG
CAAGGCTACG GCGCCAGCGA ATCGACGTCC GGCGTTACCC GGCTATCCAC GGCAGATCAT
GCCGAGGCAC TCGCGCGGCA TCCAGAGCGA CTGGCATCGT GCGGTCGCGC CATGGGGGAA
ACCGAGGTGC GGGTCGTCAA CGAACGCGGC GAGGAGGTCT GCGACGACGA GATTGGCGAA
CTCGTGATTC GTGGCGAGGA TGTGTTCCAG GGCTACTGGG GTGAGCCCGG TCTCACCAGC
GAGGTGCTGG TCGACGGCTG GCTGCACACC GGCGACCTGG CGCGTGTGGA TGCCGATGGC
TACCTGTACC TGGTCGATCG CAAGAAGGAC ATGATCATCT CGGGCGGCTT CAACGTGTAC
CCGACCGAAG TGGAAGCCAC GCTGTACCAG CATCCGGACG TCATGGAAGC CTGCGTGATC
AGCGTGCCCG ATGAAACCTG GGGCGAAAGC GTCAAGGCCG TGGTGGCGCT GTGGCCGGGC
CGGCAAGCCA GCGCATCGGA ATTGATCGGC CATTGCCGCG CGCGCATCGC CGACTACAAG
TCGCCGCGCA CGGTCGATTT CGTGGCCGAG CTGCCCAAGA ACGCAAGCGG AAAGCTGGCG
CGCAAAGTCG TGCGGGAACA GTACTGGGTG GGCGCCAGCC GCCGCGTCAA TTAA
|
|---|
| Protein sequence | MTFAYFLRRA ARYWGDNPAV LYRDRVLTYR QLDKRSTRLA NALLALGLTR GDRVAIQARN
CPEIVEIECA LYKAGLVKAA LNPRFTAEEA SDVVENCTPR VMIVGPGYTR YQRESRGFGC
VEHFFAIAGA EGQYGAYEAL IDGGATTAID YVPQPDDLAV LHFSSGSTGK IKAAMQSYGN
RLASMRKMIL GMDRPARPGD RLALIGPITH ASGMLMQPYL FLGATLVLFE KFEPAHFLAE
VPRLNLTHVF MVPAMINLLL AEPTLATADL SCLKTLAYGA APMAPARIRE AWERIGPILS
QGYGASESTS GVTRLSTADH AEALARHPER LASCGRAMGE TEVRVVNERG EEVCDDEIGE
LVIRGEDVFQ GYWGEPGLTS EVLVDGWLHT GDLARVDADG YLYLVDRKKD MIISGGFNVY
PTEVEATLYQ HPDVMEACVI SVPDETWGES VKAVVALWPG RQASASELIG HCRARIADYK
SPRTVDFVAE LPKNASGKLA RKVVREQYWV GASRRVN
|
|---|
| |