| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_5127 |
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| Symbol | |
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| ID | 4041988 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cupriavidus metallidurans CH34 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007974 |
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| Strand | + |
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| Start bp | 1822505 |
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| End bp | 1824469 |
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| Gene Length | 1965 bp |
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| Protein Length | 654 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 637980545 |
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| Product | putative sigma-54-dependent transcriptional regulator, HTH Fis-type family |
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| Protein accession | YP_587255 |
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| Protein GI | 94314046 |
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| COG category | [K] Transcription
[Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG3284] Transcriptional activator of acetoin/glycerol metabolism |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 0.53901 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATTTCCC ACGTGGCCGC CGCCGGGCGC GCTTCGCGAG GCGGCACGTC CAGTGAGGCC
CCGGAGACCG ATCAGCCCGG ACTGATCGCC CAAGCGCACG AGCGTTCGAA ATCGTATGGC
CTGCGGCCCC ATGAATCGCC CGAGTTCCTC CCCGCGCGGC CAAGCGAGCT GAAGACGCAG
ATCGAGCGCA GCCAGTCGCT GTTCACCCAC GCGCTGCCTG TCATGGAGAC GCTCCACAAC
CAGATCGTCA ACACGCAAAG CATGGTGATC CTGACCGACT CGGCTGGATT GATCCTGCAT
TCGCTTGGCG ATGATGACTT TCTGGCCAAG GCCAGCAAGG TGGCCTTGCA GCCGGGCGCG
CTGTGGTCCG AGGAAAGCCG GGGCACCAAC GCCATCGGCA CGGCACTGGT CGAGGGTCGG
CCGACACTGG TCCACGGTGC CGAGCACTAC CTGGAAGCCA ACCGGTTCCT CACCTGCTCG
TGCGCGCCGA TCCTCGACCC GTACGGCAGG ACCGTCGGCG CGCTCGACGT CACCGGCGAT
CAGCGCGGCT TCCACAAGCA CACCATGGCC CTGGTGCGCA TGTCGGCGCA GATGATCGAG
AACCAGTTGT TCGCCAATGC CTTCCAGGAC GTGGTGTGCG TGCACTTCCA CTCGCGGCCG
GAGTTCATCG GCACGCTGGT CGAAGGCATC GCCGCTTTCA CGCCTGCCGG GCGCTTTCTC
TCCGCCAACC GGAGCGGCGT CTTCCAGCTG GAATTGTCGA TCGGGGCCTT GCAGGCGCAT
ACCTTCTCAT CGCTGTTCGG CATGTCGATG CCCCAGCTGA TCGACTCGGA ACGCGGCGCG
CCCGCCGGCA CCGTCCAATT GCAACTGCCG AGTGGCGTGA AGGTGTATGC GCGCGTGGAG
TGGAAACGGC CCGCCAGCCA GATCGCGCGC GCCACCATAA GCGGCGACGC GGCCCACCAG
CGCGATACGA AGCCAGCACG CCGACAGGGC GACGGGACGC TGCAGCCAGA CGGTCTGGAT
GCCCTCGATA CTGGCGACAC CCAGATCAAG AGCGTCATCG GCAAGCTGCG CAAGGTCATC
GGCAAGGACA TTCCGATTAT GGTGCTGGGC GAGACCGGTA CCGGCAAGGA GTTGCTGGCC
CGTGCCATCC ATGCCGACAG CCCACGCCGC GCCGGGCCAT TCGTCGCCGT CAATTGCGCT
TCGATTCCCG AGGCATTGAT CGAGTCCGAG CTGTTTGGCT ACGAAGAGGG GGCATTCACG
GGCGCGCGAA AAAAGGGCGG CATCGGCAAA ATGGTGCTGG CCAACGGCGG CACGCTGTTC
CTCGACGAGA TCGGCGATAT GCCACTGCAT CTGCAGGCGC GGCTGCTGCG CGCGCTACAG
GAGCGTACGG TGTCGCCGCT GGGCAGCAAC AAGCTGGTCC AGGTCGACGT CGCCGTGGTT
TGCGCCACGC ACCGTAACAT GCGCGAGATG ATGGCCAGCG GCCAGTTCCG CGAGGACCTC
TATTACCGCC TGAATGGATT CGTGGTGCGT CTGCCGGCGT TGCGCGAGCG TGACGACCTG
GATGCCGTGG CGCATAGGCT GCTGCAACAG GACCATGCGA ATGCGCTGCC GCTCAGCGAA
CCAGTGGCAC GGATGCTGCG CAGCTATCAC TGGCCCGGCA ATATCCGCCA GCTCGCCAAC
CTGCTACGCA CCGCGCAACT GATGGCCGAG GGATCACCGG AAATCACCGA AGACCACCTG
CCTGACGACT TCCTCGAAGA CTGGCGCGCG CGACACGCGG CGGAGCCGAA CGGAGACGAT
ACCCGCCCCA GTCGGCTCGC CGACATCGAA AGCATGGCCA TCCTGACTGC GCTGAAGGCA
CACGACGGCA ATATCTCGGC GACGGCCAAG GCGCTCGGCG TTTCACGCAA TACCGTCTAC
CGCAGGATCG AGGAAGCGGG CGGCCCATCG CCGCAGGGCG ACTGA
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| Protein sequence | MISHVAAAGR ASRGGTSSEA PETDQPGLIA QAHERSKSYG LRPHESPEFL PARPSELKTQ
IERSQSLFTH ALPVMETLHN QIVNTQSMVI LTDSAGLILH SLGDDDFLAK ASKVALQPGA
LWSEESRGTN AIGTALVEGR PTLVHGAEHY LEANRFLTCS CAPILDPYGR TVGALDVTGD
QRGFHKHTMA LVRMSAQMIE NQLFANAFQD VVCVHFHSRP EFIGTLVEGI AAFTPAGRFL
SANRSGVFQL ELSIGALQAH TFSSLFGMSM PQLIDSERGA PAGTVQLQLP SGVKVYARVE
WKRPASQIAR ATISGDAAHQ RDTKPARRQG DGTLQPDGLD ALDTGDTQIK SVIGKLRKVI
GKDIPIMVLG ETGTGKELLA RAIHADSPRR AGPFVAVNCA SIPEALIESE LFGYEEGAFT
GARKKGGIGK MVLANGGTLF LDEIGDMPLH LQARLLRALQ ERTVSPLGSN KLVQVDVAVV
CATHRNMREM MASGQFREDL YYRLNGFVVR LPALRERDDL DAVAHRLLQQ DHANALPLSE
PVARMLRSYH WPGNIRQLAN LLRTAQLMAE GSPEITEDHL PDDFLEDWRA RHAAEPNGDD
TRPSRLADIE SMAILTALKA HDGNISATAK ALGVSRNTVY RRIEEAGGPS PQGD
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