| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_5092 |
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| Symbol | dppE |
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| ID | 4041953 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cupriavidus metallidurans CH34 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007974 |
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| Strand | + |
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| Start bp | 1782065 |
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| End bp | 1783078 |
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| Gene Length | 1014 bp |
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| Protein Length | 337 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 637980510 |
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| Product | oligopeptide/dipeptide ABC transporter ATP-binding protein |
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| Protein accession | YP_587220 |
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| Protein GI | 94314011 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG4608] ABC-type oligopeptide transport system, ATPase component |
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| TIGRFAM ID | [TIGR01727] oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.00111978 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.642799 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACCCCT CTCAGGAACC CATCGCAGCG ACCGCGCAGG CCGCGCCGCT GCTGCAGGTG
GACGGGCTGC GCAAGCACTA CACTGCACCG CGCCGCTGGC CCTCGCCGCC GCCCCGGCCG
ATCCAGGCGG TTGATAACGT CTCCTTCACG GTCGCTCGTG GCGAAACACT GTCCCTGGTG
GGCGAATCCG GCTGCGGCAA GACCACCACC GCAAAGTCCG TGCTGCGTCT GGTAGAGCCC
ACCGCAGGCT CGGTCAGGCT GGACGGCGAG GAACTGCTGA CCCTGTCGGC CGGAGAGATG
CGTCGCCGCC GGCGCGAACT ACAGATCATC TTCCAGGACC CGTATGCTTC GCTGAGCCCC
CGTCTGACTG CGGGAGAAAT CGTCGCGGAG CCGCTGCGCA ACTTCGGGAT GCGCTCCCGC
GCGGAGCGCG AGGCGCGCGT GCAGTGGCTG TTCGGCAAGG TCGGCCTGCG CCCCGAGGCC
ACCGCGAAGT ATCCGCATGA GTTCTCGGGC GGGCAACGCC AGCGGCTCGG CATCGCCCGC
GCACTGGCCA TGCAGCCCAA GCTGATCGTG TGCGACGAAC CGGTCTCCGC GCTCGACGTA
TCGGTGCAGG CCCAGGTCGT CAACCTGCTG ATGGACCTGC AGCAGGAGTT CGGCATCGCC
TATCTCTTCG TCGCCCATGA TCTGGCCGTG GTGCGCCATA TCAGCCGCCG CGTGGCCGTG
ATGTACCTGG GTCGCATCGT CGAACTGGCC GATCGCGATG CGCTGTTCTC TACGCCGCGC
CACCCCTATA CGGAGATTCT GCTGTCGGCC GCGCCGGTGC CAAACCCGCG CGCGCCGGCA
CGACGCATTC TGCTGCAGGG CGATCCGCCC AGCCCGGCAA ACCCGCCCTC TGGCTGCCAC
TTCCATACGC GCTGCCCGCT TGCGCAGCCC ATTTGCCGCG AGCAGGCACC GGCGCTGACG
GCGCGCCCGT CGGATGCGCC GGGCGGCCAC CAGGTCGCCT GTCATTTCCG CTGA
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| Protein sequence | MNPSQEPIAA TAQAAPLLQV DGLRKHYTAP RRWPSPPPRP IQAVDNVSFT VARGETLSLV
GESGCGKTTT AKSVLRLVEP TAGSVRLDGE ELLTLSAGEM RRRRRELQII FQDPYASLSP
RLTAGEIVAE PLRNFGMRSR AEREARVQWL FGKVGLRPEA TAKYPHEFSG GQRQRLGIAR
ALAMQPKLIV CDEPVSALDV SVQAQVVNLL MDLQQEFGIA YLFVAHDLAV VRHISRRVAV
MYLGRIVELA DRDALFSTPR HPYTEILLSA APVPNPRAPA RRILLQGDPP SPANPPSGCH
FHTRCPLAQP ICREQAPALT ARPSDAPGGH QVACHFR
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