Gene Rmet_5088 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRmet_5088 
SymboldppA 
ID4041949 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCupriavidus metallidurans CH34 
KingdomBacteria 
Replicon accessionNC_007974 
Strand
Start bp1777572 
End bp1779155 
Gene Length1584 bp 
Protein Length527 aa 
Translation table11 
GC content66% 
IMG OID637980506 
Productputative oligopeptide/dipeptide ABC transporter 
Protein accessionYP_587216 
Protein GI94314007 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0747] ABC-type dipeptide transport system, periplasmic component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.0437131 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value0.457948 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAACACC GACCGCTCGC CACTCTCGTC ATGGGTGCCC TGTTGCTGGC CGGCACCAGC 
CTGCCGGCGC AGGCGCAGGC ACCCGCCAGG ACGCTGAAGA TCGTGCCGCA CGCCGACCTG
AAGATCCTCG ACCCGACCTT CACCACGGCC TACATCACGC GCAACTTCGG CTATATGGTC
TATGACACGC TGTTCGCGCA GGACGCGACC GGCAAGCCGC AACCGCAGAT GGTGGAGAAG
TACACCAGCA GCAAGGACGG CAAACAGTGG AGCTTCACGC TGCGTCCCGG CCTGAAGTTC
TCCGATGGCA ACGCCGTGAC CGCCGCGGAC GCAGTGGCAT CGTTGCAGCG CTGGGGCGCG
CGCGACAGCC TGGGACGCTC GATGGGCGAG GCCGGCGCCG AGTGGAAGGT CGTCGACGCA
CGCACCTTCA CGCTGACGCT ACAGCAGCCC TTTGGGCTGG TGCTGGAAGC GCTGGCCAAG
CCCTCCGGCT TTCCACCGGT GATCCTGCCC GAACGCCTGG CCAAGCAACC GGCCACCGCG
CCGCTGAACG AAGTGGTGGG TTCCGGTCCC TATCTGTTCA AGCGCGACGA ATGGGTGCCG
GGCAACAAGG CCGTGTTCGT GCGCAACCCC AACTACACGG GCCGCCGCGA AGCACCAAGC
GGTCTGGCCG GCAACAAGAC CAGCCACTTC GATCGCATCG AATGGCTGTA CCTCCCCGAC
GCCAACAGCG CGGTCGCCGC CCTCAAGCGC GGCGAGGTGG ACCTGATCGA GCAGTTGCCA
CCGGACTACA TCACGCCGCT GCGTTCCGAC AACAGCCTCA AGGTCGGCTC TGGCGGCACC
TACCAGGGAA TGCTGGTGAT GAACCAGTTG CACCCGCCCT TCAACAATCC GAAGGTACGC
CAGGCCCTGC TGCAGGCGGT CAGCCAGGAG CGCTTCACCG CGGCCATGGG CTTCCCGCTG
GACATGCGCA TGAACTACTG CGCCACGTAC TTCATTTGCG GCAGCCCCAA CGACACGGCC
GCCGGCGCCG AACCCTTCCG CAAACCGGAC GTCGCCAAGG CCAAGCAGAT GCTTGCGGCC
TCGGGCTACA AGGGTGAAAA GGTGGTGTTG CTGGTGCCCA CCGACATCAC CGCGCTGAAC
GCCGAGGCGC TGATGGCCGC GCAGACCATG CGCAGCATCG GCATCAACGT CGACATGCAG
AACATGGACT GGGCCTCGAT CGGCGCGCGA CGTGCCAAGC GTGACGCGCC GGATGCCGGT
GGCTGGAACA TGTATGTGAC CGTGGCAGGC GAGTTCGACG TCAACACCCC GGTTACCAAT
GCCTACCTCA GCGCCGCCTG CGGCAACAGC CTGCCGGGCT GGCCGTGCGA CAAGCCGCTG
GATGAATTGC GCAGCGCGTG GGTGCGCGAG ATGGTGCCGG CCAAGCGGCG CGATCTGCTC
GATGCCTTCC AGAAGCGCGC CTATGAAGCG GTGCCGTACG TGAACACCGG GCAGTACTCG
TCCGCGTTCG CCGCGCGGGC CAACCTGAAG GGCCTGGACA AGCTGTGGGG CGGCGTACCC
ACGGTCTGGG CGCTTGACCG CTGA
 
Protein sequence
MQHRPLATLV MGALLLAGTS LPAQAQAPAR TLKIVPHADL KILDPTFTTA YITRNFGYMV 
YDTLFAQDAT GKPQPQMVEK YTSSKDGKQW SFTLRPGLKF SDGNAVTAAD AVASLQRWGA
RDSLGRSMGE AGAEWKVVDA RTFTLTLQQP FGLVLEALAK PSGFPPVILP ERLAKQPATA
PLNEVVGSGP YLFKRDEWVP GNKAVFVRNP NYTGRREAPS GLAGNKTSHF DRIEWLYLPD
ANSAVAALKR GEVDLIEQLP PDYITPLRSD NSLKVGSGGT YQGMLVMNQL HPPFNNPKVR
QALLQAVSQE RFTAAMGFPL DMRMNYCATY FICGSPNDTA AGAEPFRKPD VAKAKQMLAA
SGYKGEKVVL LVPTDITALN AEALMAAQTM RSIGINVDMQ NMDWASIGAR RAKRDAPDAG
GWNMYVTVAG EFDVNTPVTN AYLSAACGNS LPGWPCDKPL DELRSAWVRE MVPAKRRDLL
DAFQKRAYEA VPYVNTGQYS SAFAARANLK GLDKLWGGVP TVWALDR