| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_5015 |
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| Symbol | betA3 |
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| ID | 4041877 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cupriavidus metallidurans CH34 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007974 |
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| Strand | + |
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| Start bp | 1694792 |
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| End bp | 1696465 |
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| Gene Length | 1674 bp |
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| Protein Length | 557 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 637980436 |
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| Product | choline dehydrogenase, a flavoprotein |
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| Protein accession | YP_587146 |
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| Protein GI | 94313937 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG2303] Choline dehydrogenase and related flavoproteins |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.00654928 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.219358 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGACCCAAA ATGAAAAACT CGCCGGCGAT ACGCCAGCGG TGGCGGCCTT CGACTACATC
GTCGTCGGCG CAGGATCAGC CGGGTGCGCC GTCGCGGCGC GGCTGGCAGA GGATGCCGGC
GTGACCGTGG CCCTGCTTGA AGCTGGCCCG AGCGACCATC ACTTCAGCGT CTGGACGCCG
GTGGCCCTCG CCGCGGTCGT CCCGAAAGCC GGTCCGCGCA ACTACGCCTA TCGCTCCGTG
CCGCAGCCGG GGCTCAACGG CCGGCGCTCC TACCAGCCGC GCGGGCGCGG TTTGGGCGGC
AGCTCGTCGA TCAATGGCAT GGTCTATATC CGTGGCCACC GCAAGGACTA CGACACCTGG
GCGCAACTGG GCTGCCAGGG CTGGGGCTAT GAGGATGTGC TCCCCTACTT CCGTCGCAGC
GAAACCAACC ATGCGCTCGA TGACCGGCAC CACGGCAAGG ACGGCCCGCT GCACGTCAAC
GAGCTGCGCA CGCCCAACCC GTTTTCCGCG CGCTTCATCG AGGCCGCGAT GCAGGCCGGC
ATCCCGTTCA ACCGCGACTT CAACGGCGCC GAACAGGACG GCGCCGGCTA TTACCAGGTA
ACACAGCGCA ACGGCGAGCG CTGGAACAGC GCGCGCGCCT ACCTGCACCA TGGCGATGCC
AACGATGGCA CCTTCAGCGG CGGCCGCCGC AACCTGACGG TCTGGACGGA CACGCAGGTG
CAGCGCATCG TGTTCGAGGG TCGCCGCGCG GTCGGCGTCA GCATCACGCG CGCCGGCGTC
ACACAGGTGC TACGCGCGCG CCGCGAAGTG ATCGTCAGCG GCGGCGCCTT CAACTCGCCG
CAGCTTCTGC TCGCGTCCGG TATCGGCCCT GCTGCCCATC TGCGCGATCT CGGCATCGAC
GTCGTACACG ACCTGCCCGG CGTGGGCGAA AACCTGCAGG ACCACCTTGA CATCGCTGTG
TGCCATCAGG TGCCGTCGCC GCAGCTTTTC GGATACTCGC TGCGCGGCGC GGCCAAGATG
CTGGGCCAGT GGCGCCAGTA TCGACGCGAC CGCACCGGCA TGTTCAGCTC CAATCTTGCC
GAAGCAGGCG CCTTCCTGCG CAGCCGGCGG GAACTGGCCG AGCCCGACCT GCAGTTCCAC
TTCGTGCCGG GGCTTTCCTC GACGCATACC GGCATGCGAC GCCGCGACCT CAAGCATGGC
TTCACCGGCC TGGCCTGCCT GCTGCGCCCC GAAAGCCGCG GCCACGTGCG GCTGAACAGT
GCCGATACCC GCGACGCGCC GCTGATCGAT CCGCGCTTCC TTTCCGCCGA ATCGGACATG
GCAGGCATGG TCGCCTGCTT CCGCCTGATG CGCCGCATCC TGGCGCAGCC GGCACTGGCT
TCCGCGCAAG GCCGTGAACT GCTCACCGAG GAGATCGGCC CCGGCGACGG CGACGAAGCC
GCCATCCGCG CCTATGTGCG CCGTCATGCG GATTCGGTCT TCCACGCTAT CGGAACTTGC
AAGATGGGCG TGGATGCAAT GGCCGTGGTC GACCCGTCCC TGCGTGTGCA CGGCGTGGAA
GGCTTGCGCG TGGTCGACGC CTCGATCATG CCGACGCTGA TCGGCGGCAA CACCAACGCA
CCTGCCATGA TGATCGGCGA GAAGGCCGCG GACCTGATCC GCTCGGGCGC CTGA
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| Protein sequence | MTQNEKLAGD TPAVAAFDYI VVGAGSAGCA VAARLAEDAG VTVALLEAGP SDHHFSVWTP
VALAAVVPKA GPRNYAYRSV PQPGLNGRRS YQPRGRGLGG SSSINGMVYI RGHRKDYDTW
AQLGCQGWGY EDVLPYFRRS ETNHALDDRH HGKDGPLHVN ELRTPNPFSA RFIEAAMQAG
IPFNRDFNGA EQDGAGYYQV TQRNGERWNS ARAYLHHGDA NDGTFSGGRR NLTVWTDTQV
QRIVFEGRRA VGVSITRAGV TQVLRARREV IVSGGAFNSP QLLLASGIGP AAHLRDLGID
VVHDLPGVGE NLQDHLDIAV CHQVPSPQLF GYSLRGAAKM LGQWRQYRRD RTGMFSSNLA
EAGAFLRSRR ELAEPDLQFH FVPGLSSTHT GMRRRDLKHG FTGLACLLRP ESRGHVRLNS
ADTRDAPLID PRFLSAESDM AGMVACFRLM RRILAQPALA SAQGRELLTE EIGPGDGDEA
AIRAYVRRHA DSVFHAIGTC KMGVDAMAVV DPSLRVHGVE GLRVVDASIM PTLIGGNTNA
PAMMIGEKAA DLIRSGA
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