Gene Rmet_5002 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRmet_5002 
Symbol 
ID4041864 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCupriavidus metallidurans CH34 
KingdomBacteria 
Replicon accessionNC_007974 
Strand
Start bp1682628 
End bp1683953 
Gene Length1326 bp 
Protein Length441 aa 
Translation table11 
GC content64% 
IMG OID637980423 
ProductMFS family membrane efflux protein 
Protein accessionYP_587133 
Protein GI94313924 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2814] Arabinose efflux permease 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value0.151073 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGGCTCGTA CATTCCGTTC GCTGCGCAAC TTCAACTACC GGGTGTGGGC GAGTGGCGCG 
ATCGTGTCCA ACATCGGCAC GTGGATGCAG CGCACGGCGC AGGACTGGCT CGTGCTCACC
GAACTCACGC ATCACAATGC GACTGCCGTC GGGATCGTGA TGTCGCTGCA GTTCGGCCCC
CAGATGCTGT TGTTGCCGCT TACCGGCTAT GCGGCCGACC ACTTCAACCG CCGCAAACTG
CTGTTCATCA CGCAGACGGC CATGGGTTTG CTGGCGCTTG GGCTGGGCCT GATGACCGTC
ACTGGCCTGG TACGTCTGTG GCATGTCTAC GTGTTCGCAT TGCTGCTCGG GTGCGTCACC
GCGTTCGACG CCCCCGCGCG GCAGACCTTT GTCTCCGATC TGGTCGGCGA GGAGGACCTG
CCCAATGCCG TTGCGCTGAA CTCCACCTCG TTCAATGGCG CGCGGATGAT TGGCCCTGCG
ATCACGGGCC TGCTCATTGC GTCGATCGGC ACGGGATGGG TATTCCTGAT CAACGCGCTG
TCGTTCGTCC CGGTGATCGG CGCGCTGCGC ATGTTGCGTC AGCACGAGCT GCACCTGAAG
CCGCCCGCGC AGCGCTCGCG CGGCAGCTTT CTGGAAGGAT TCAGGTACGT GTGGAAGCGC
CCCGACCTGA AGGCGGCGCT GTTCATGCTG TTCCTGATCG GCACCTTCGG CCTGAACTTC
CCGATCTTCA TTTCGACGAT GTCGGTCAGT GCGTTTCATG CCGGCGCGGG ACAGTACGGC
TTGCTGAGTT CGACCATGGC GATAGGGTCT GTTACCGGCA CGCTGCTGGC CGCGCGCCGG
GCACGGCCGC GCATGGCGAT CCTGGTCGGT GCTGCAACCA TCTTTGGCGT GGGCTGCATG
TTTGGCGCAT TGATGCCGAA TGCGGTGCTG TTCGGCCTGA CGCTGGCGGT GATCGGTGCA
TCGACACAGA CGTTTACCAC GTCCACCAAC AGCCTCGTGC AGATCTCGAC CGAGCCGGCG
ATGCGTGGCC GGGTAATCGC TATCCTGCTG GCCATTGCAC TGGGCACCAC GCCGCTTGGC
GCGCCAGTGG TGGGGTGGGT GGCGGACCGC TTTGGTCCGC GCTGGGCGCT GGGCGTTGGG
GCGGCTTCGG GATTTGCCGC GGCGCTCGTC GGTCTGTTCT ATCTGATGAG AAATCGCAAC
CTGCGCTTCT ATATCGAGAC GGGTCGCCTG CGCTACAGCA TCGACAAGCC GCGCCAGACG
GCGTTCATGG CGGCTCCCGC CGCGTCAGTG CCAAATGTGG TGATGAGCAA GGCGGAAGAC
GAGTGA
 
Protein sequence
MARTFRSLRN FNYRVWASGA IVSNIGTWMQ RTAQDWLVLT ELTHHNATAV GIVMSLQFGP 
QMLLLPLTGY AADHFNRRKL LFITQTAMGL LALGLGLMTV TGLVRLWHVY VFALLLGCVT
AFDAPARQTF VSDLVGEEDL PNAVALNSTS FNGARMIGPA ITGLLIASIG TGWVFLINAL
SFVPVIGALR MLRQHELHLK PPAQRSRGSF LEGFRYVWKR PDLKAALFML FLIGTFGLNF
PIFISTMSVS AFHAGAGQYG LLSSTMAIGS VTGTLLAARR ARPRMAILVG AATIFGVGCM
FGALMPNAVL FGLTLAVIGA STQTFTTSTN SLVQISTEPA MRGRVIAILL AIALGTTPLG
APVVGWVADR FGPRWALGVG AASGFAAALV GLFYLMRNRN LRFYIETGRL RYSIDKPRQT
AFMAAPAASV PNVVMSKAED E