Gene Rmet_4993 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRmet_4993 
Symbol 
ID4041855 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCupriavidus metallidurans CH34 
KingdomBacteria 
Replicon accessionNC_007974 
Strand
Start bp1671883 
End bp1673463 
Gene Length1581 bp 
Protein Length526 aa 
Translation table11 
GC content66% 
IMG OID637980414 
ProductMFS family membrane efflux protein 
Protein accessionYP_587124 
Protein GI94313915 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2814] Arabinose efflux permease 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value0.521864 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGGGGGCG ACCACCGTTC TGACCGTTGG ACGGATGGGG GCACTGGCCG GTCACGGCGC 
GCGGGGGCGC GTCGGACGCG ACGAAATCAG CATAGCAGAT GCATACTGCC CGCACGCGGG
CAAAACCGCG TGCCGCTATA CTCCGTGGAT CCCACGCCCT CGGCCGTTGA TTCCGGCACA
CCAGACACCA TGACGCCAGC CACTCCACCC ATCGCAGTCG TTGGCGGGCA GCCCGTGCCG
GACGGCCATG CCGGGGCCAC CTCCCGCAAC GGCGCAAAGG TGCCGTTCGA GGCCGGTATC
CGGTTGGCCG GTGTCGGCAA GTTTCAGTAT CGCCTCTTCG TCATCTTCGG CCTGGTCTGG
CTCGCCGATG CCATGCAGGT GCTGTCGATC GGCTTCAGCG CGCCGTCCAT CGCGAAGACG
TTTGGCATCA CGATGCCCCA GGCGCTACAG ACCGGCACGC TCTTCTTCGT CGGGATGCTG
GTAGGCGCGA TTGTCTTCGG CCGCCTGGCC GACCGCATTG GCCGCCGCCC CGTGCTGATG
ATCGCCATCG TCATCGACGC GCTCTCCGGC ATCGCATCGG CCTTCGCGCC AGAACTGTCC
TGGCTGCTCG TGTTGCGCTT CCTGACGGGC GTCGGTGTCG GCGGCACGCT GCCGGTTGAC
TACACCATGA TGGCCGAATT CCTGCCCAGC GACCGTCGCG GCCGCTGGCT GGTCCTGCTC
GAATCGTTCT GGGCGATCGG CACGATCTGC TTGGCGGTAC TGGCGCTCGT GGCGCTGTCC
CATGGCGATC AGGCCTGGCG CGTCATTTTC CTGGTCACAG GCATTCCCGC GCTGATTGGC
GTTGTCCTGC GCTTCTACAT TCCGGAATCG CCGATGTACC TGAACCGTAG CGGGCGATCG
GACGAGGCCC GCAAGGTACT GCAACGGGTG GCGAAAACAA ACGGCCGAAA CGTCGAAATC
CCGGCCCTGC AATCCGACAT CGTCGCGCCG AAATCGGTCT TGACGCTGTT CTCCGGAACG
TTCCGCCGCC GCAGCTTCGC GCTGTTTGCC GCGTGGGCGC TGATCTCGAT CGCGTACTAC
GGTGTGTTCG TCTACCTGCC AATCAAGCTC GGCGCGGAGG GCTTCGCCTT CATGCGCGGG
CAGGTCTTCC TGGTCGTCCT CGCCATCGTC CAGCTCCCCG GCTTCGCTTT GTCAGCGTAC
GGCGTCGAGC GCTGGGGCCG CAAACCCACG CTGATCGGAT TCCTGCTGCT CAGCGCGGTC
GGCTGCATGC TGTATAGCCT CGGCACGTCT CCCACGGTCG TCGTCGGCTC CACGTTGCTG
ATGAGCTTCG CGCTGCTGGG TACCTGGGGC GCGCTGTATG CGTTCACACC AGAGGTCTAC
CCGACCGACC TGAGAGCCAC TGGAATGGGC GCGGCCGGCG CGGTGGCGCG TTTCGGCGGC
CTGTTCGCAC CCGCGATCAT CGCGCCAGTG ATGGCCACGC ATTTCACCCT GGCCCTCGCG
TTGATCTCCA GCATGTTGCT GGCCGGCGCC TTCGCCATCG GCATGGTCAA CGTGGAATCG
AAGGACCGCG CACTCGATTG A
 
Protein sequence
MGGDHRSDRW TDGGTGRSRR AGARRTRRNQ HSRCILPARG QNRVPLYSVD PTPSAVDSGT 
PDTMTPATPP IAVVGGQPVP DGHAGATSRN GAKVPFEAGI RLAGVGKFQY RLFVIFGLVW
LADAMQVLSI GFSAPSIAKT FGITMPQALQ TGTLFFVGML VGAIVFGRLA DRIGRRPVLM
IAIVIDALSG IASAFAPELS WLLVLRFLTG VGVGGTLPVD YTMMAEFLPS DRRGRWLVLL
ESFWAIGTIC LAVLALVALS HGDQAWRVIF LVTGIPALIG VVLRFYIPES PMYLNRSGRS
DEARKVLQRV AKTNGRNVEI PALQSDIVAP KSVLTLFSGT FRRRSFALFA AWALISIAYY
GVFVYLPIKL GAEGFAFMRG QVFLVVLAIV QLPGFALSAY GVERWGRKPT LIGFLLLSAV
GCMLYSLGTS PTVVVGSTLL MSFALLGTWG ALYAFTPEVY PTDLRATGMG AAGAVARFGG
LFAPAIIAPV MATHFTLALA LISSMLLAGA FAIGMVNVES KDRALD