| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_4975 |
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| Symbol | tniR |
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| ID | 4041837 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cupriavidus metallidurans CH34 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007974 |
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| Strand | + |
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| Start bp | 1652812 |
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| End bp | 1653426 |
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| Gene Length | 615 bp |
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| Protein Length | 204 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 637980396 |
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| Product | serine-based site-specific recombinase activity |
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| Protein accession | YP_587106 |
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| Protein GI | 94313897 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1961] Site-specific recombinases, DNA invertase Pin homologs |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 0.283487 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.35895 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGCTGATTG GCTACATGCG GGTATCGAAA GCAGACGGCT CACAGGCCAC CGACTTGCAG
CGTGATGCAC TGATCGCTGC CGGCGTCGAT CCGGCCCATC TCTACGAGGA TCAAGCGTCG
GGCAAACGCG AGGATCGTCC CGGCCTGTTG AGCTGCCTGA AGGCGCTACG ACCGGGGGAT
ACGTTGATGG TGTGGAAACT TGACCGGCTC GGGCGCGATC TGCGGCATCT CATCAACACC
GTGCATGACC TGACCGGGCG AGGCATCGGT CTGAAAGTGT TGACTGGGCA CGGTGCAGCC
ATTGACACCA CGACGGCCGC CGGCAAGTTG GTCTTCGGCA TCTTCGCCGC GCTGGCCGAG
TTCGAGCGCG AACTGATTAC CGAGCGCACG ATTGCAGGAT TGGCTTCGGC GAGGGCGCGC
GGTAGGAAGG GCGGCCGGCC CTTCAAGATG ACTGCCGCCA AGTTGCGGCT GGCGATGGCC
GCTATGGGGC AGCCCGAAAC CAAGGTCGGC GATCTATGTC AGGAACTGGG CATCACAAGA
CAGACCTTGT ATCGGCACAT TTCGCCGAAG GGCGAGTTGC GCCTTGATGG CGAGAAACTG
CTCAGTCAAA TTTGA
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| Protein sequence | MLIGYMRVSK ADGSQATDLQ RDALIAAGVD PAHLYEDQAS GKREDRPGLL SCLKALRPGD
TLMVWKLDRL GRDLRHLINT VHDLTGRGIG LKVLTGHGAA IDTTTAAGKL VFGIFAALAE
FERELITERT IAGLASARAR GRKGGRPFKM TAAKLRLAMA AMGQPETKVG DLCQELGITR
QTLYRHISPK GELRLDGEKL LSQI
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