| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_4847 |
|---|
| Symbol | |
|---|
| ID | 4041709 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cupriavidus metallidurans CH34 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007974 |
|---|
| Strand | + |
|---|
| Start bp | 1504535 |
|---|
| End bp | 1506238 |
|---|
| Gene Length | 1704 bp |
|---|
| Protein Length | 567 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637980268 |
|---|
| Product | putative transporter |
|---|
| Protein accession | YP_586978 |
|---|
| Protein GI | 94313769 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG2985] Predicted permease |
|---|
| TIGRFAM ID | [TIGR01625] AspT/YidE/YbjL antiporter duplication domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.0674099 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.346719 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAATGCT CAATCGGATT CTTCAACCAG ATGCCCACGG CGGTGCTGTT CATCACCGTC
GGCCTTGGCT ACGCCATTGG CAAGCTTCGC GTCGGCCCGA TCGTGCTCGG CGGTGTCTGC
GGCACGCTGA TCGTGGCGCT GCTTGTCGGG CAGACCGGGT GCCAGATGCA CGGCGAGTTG
AAGGACGTTG CCTTCGCGCT CTTCATCTTC GCGATGGGAT ATTCGGGCGG CCCGCAGTTC
TTCGCGAACT TGAACCGCTC CAGCCTGCGG TTCATGGTCC TGCCGCTCAT CGAAGCGTTC
GTGGTACTGG CAATCGTGCT GGTGGCCGTG CGAATGCTGG ATCTGGACCC TGGCACGGCG
GCGGGTCTCG CAGCCGGCGC GGCGACGGAA TCCGCAGTGG TCGGCACGGC TGCGGAGGCG
CTCAAACATC TGAACCTGGT CCCGACAGAA CTGGCCCGGA TGCAATCGAA CATCGCCACG
GCCTATACGC TGACCTACCT CGTCGGCCTG ATCAGCATCG TGTTCTTCAC CAGCCAGGTG
GCTCCCTTCC TGCTTCGCTT CAACCTGCGC GAGGCATCGA GCGAACTGGC CAAGGAACTG
CAGGCCGCGT CCGACGATGA CGTCGCCACG CAGCCGGTGC TGCCCCGCCT GGTGGGACGT
GCTCACCGCG TGGAACATGC GGCCGGCCTG ACCGTGCGCC AACTGGAAGC CGCGCTTGGC
GGGCGGACAC TGGTGATGGG GCTGGTGCGC GACGGCAAGC TCATGGAGTC GGTGCCGGAT
CTGACCATAA AACGGGACGA CATCGTGGCG CTGATCGGCG TGCGCGACAA ACTCGTCTCG
GCTCGCGAGG TGATTGGCCA GGAGGTGTCG TTGCCGCTGA GCCAGTCCGA CGTGCTGCGG
CTCGAAGAGC ATCAGGTGAT CGTCAACAAT CCCGCTGTCA ATGGCCGCTC GCTGGCCGAA
CTCGGCCGGG AAGCCGCCCA GCAACATCTT CGCTACGTCT GGGTCCAGCA GATCGTTCGA
TCCGGCATGA GCCTGCCGAT CACGCCCGCC ACACGCCTGC AGCATGGCGA CCGGGTAAGC
CTGGTGGGCG TGGAACCGAC ACTGACCTCA GCGGCCCGCA ACCTGGGCAG GGATCTACGC
ACCACCGATA CCACCGAACT CGTCTTCCTG TGCGCGGGCA TCCTGATTGG CCTCTTGATC
GGCAGCGTCA CCCTGAAGGC AGCCGGCATC CCGATCTCGC TCGGCAGCGG CGGCGGCGCG
CTGCTCAGCG GTCTTGTCTT CGGCTGGATC AATTTCAAAC GGCCCGGCGT GGGCGACATG
CCAAGCGCCG CGGTCCAGTT GCTGAAAGAC CTGGGACTGG CGATGTTCGT GGCCTGCGTC
GGCTTGTCTG CCGGACCTGA TGCCGTCACG CTGATTCGCG AGCATGGCGC CGTGTTGCCG
CTCGTCGGCC TGGCCGTGTC GCTGACGCCG GCATGCATGT CACTCTGGAT CGGCCACAAA
TTCCTGAAAA TCCAGGGGCC ACTGCTGGTC GGCGCCATCG CGGGGCAGCA CGTCAGCACG
CCGGCGATCA GCGCCGTGCT GGCCGCCAGC CAGAGTTCGG TGCCGCTGCT CGGCTACACG
GTGACGTATG CCATCGCCAA CGTGATGCTG CCGGTGCTTG GGCCAATCAT CGTGGCCCTC
GCATATCGCG TTGGCGGCAT GTGA
|
|---|
| Protein sequence | MQCSIGFFNQ MPTAVLFITV GLGYAIGKLR VGPIVLGGVC GTLIVALLVG QTGCQMHGEL
KDVAFALFIF AMGYSGGPQF FANLNRSSLR FMVLPLIEAF VVLAIVLVAV RMLDLDPGTA
AGLAAGAATE SAVVGTAAEA LKHLNLVPTE LARMQSNIAT AYTLTYLVGL ISIVFFTSQV
APFLLRFNLR EASSELAKEL QAASDDDVAT QPVLPRLVGR AHRVEHAAGL TVRQLEAALG
GRTLVMGLVR DGKLMESVPD LTIKRDDIVA LIGVRDKLVS AREVIGQEVS LPLSQSDVLR
LEEHQVIVNN PAVNGRSLAE LGREAAQQHL RYVWVQQIVR SGMSLPITPA TRLQHGDRVS
LVGVEPTLTS AARNLGRDLR TTDTTELVFL CAGILIGLLI GSVTLKAAGI PISLGSGGGA
LLSGLVFGWI NFKRPGVGDM PSAAVQLLKD LGLAMFVACV GLSAGPDAVT LIREHGAVLP
LVGLAVSLTP ACMSLWIGHK FLKIQGPLLV GAIAGQHVST PAISAVLAAS QSSVPLLGYT
VTYAIANVML PVLGPIIVAL AYRVGGM
|
|---|
| |