| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_4826 |
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| Symbol | mdtD |
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| ID | 4041688 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cupriavidus metallidurans CH34 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007974 |
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| Strand | - |
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| Start bp | 1478366 |
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| End bp | 1479820 |
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| Gene Length | 1455 bp |
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| Protein Length | 484 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 637980247 |
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| Product | EmrB/QacA subfamily transporter |
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| Protein accession | YP_586957 |
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| Protein GI | 94313748 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG2814] Arabinose efflux permease |
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| TIGRFAM ID | [TIGR00711] drug resistance transporter, EmrB/QacA subfamily |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.0325422 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.202323 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCACAG CCACGCCTGC CGACCACCCG TCCACGATGC CCATCGACCG CCGCCTGCGC
TTCATGCTGT GGGTGGTGGC GGTGGGCTTC TTCATGCAGA CGCTCGACTC GACGATCGTC
AACACCGCCT TGCCGTCGAT GGCGCACAGC CTTGGCGAGA GCCCGTTGCG GATGCAATCG
GTGATCATCG CCTACTCGCT GACCATGGCG GTCATCATTC CTGCTTCGGG CTGGCTGGCG
GACAAATTCG GCACAAGAAC CATCTTCCAG ATCGCGATCG TGTTGTTCGT GGCCGGATCC
CTGCTTTGCG CCGCGGCGCC TTCGCTGCCG TTCCTGACCG CGGCCCGCGT GGTGCAGGGG
GCGGGCGGGG CGATGCTGCT GCCCGTGGGG CGACTCTCCG TACTGCGTAC GTTTCCGCGC
GAGCAGTATC TGCAGGCGCT GAGTTTCGTG GCCATCCCAG GCATGATCGG TCCGCTCATC
GGCCCGACGC TGGGCGGTTG GATTACCCAG ACCTTCTCCT GGCACTGGAT CTTCCTGATC
AACGTGCCGG TCGGCCTGCT GGGCGTGCTG GCCACCATCC GCTATATGCC GAACTCGCGC
TTGCCCGGCA TCGGCACGTT CGATGCGGTT GGCTATGCGT TCCTGGCAAT TGCCATGGTG
ACGTTGTCGT TCTCGCTCGA CGGACTCGCG GAGATGGGCT TTCAGCACGC CACGGTGCTG
ATGCTGCTGA TCGCCAGCAT GGCCGCGCTC AGCGCGTACG TGCTCCACGC CAACAAGCGC
AAGCAGCCGC TGTTCCCGCT GAGGCTGTTC CGCATTCATT CGTTCAGCGT GGGCCTGCTT
GGCAACCTGT TCGCGCGTAT CGGCAATGGC GCCATGCCGT TCCTGATTCC ACTGACCCTG
CAGGTCAGCC TCGGCTATTC CCCGTTCGAT GCCGGCCTGA TGATGCTGCC TGTCACGGCC
GCCGGCATGG CGTCGAAGCG CCTGGCCACG TGGCTGATCG AACGGCACGG CTATCGCCGC
GTGCTGGTGA CGAACACATT CGTGGTCGGA CTGGTCATGG CGTCGTTCGC GCTGATCACG
CCGACGCGCC CATTGGCGCT CATCGTGGTG CTACTGGCGA TTTTTGGCGC GGTTAATTCG
ATCCAGTTCA CCGCGATGAA TACCGTGACG CTCAAGGATC TGAGTGGTAC CCGGGCGAGC
AGCGGCAACA GCATGTTGTC GATGGTGCAG ATGTTGTCGA TGAGTCTGGC GGTGACATCC
GCCGGCGCAT TGCTGGCGAC GTTCCAGGAG GGCATCGGCG AGCATCACCT GGACGTCCTG
CCTGCGTTTC ACGCGACGTT CGTCTGCGTC GGGCTCATTA CGTCGGCATC GGCGTGGATC
TTCATGCAGC TTTCGCCCGA GAAGGCGGAG CGGCACAAGG CCAGGGAAGA CGTGAAGCAG
GGTGGGGAGG TTTGA
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| Protein sequence | MSTATPADHP STMPIDRRLR FMLWVVAVGF FMQTLDSTIV NTALPSMAHS LGESPLRMQS
VIIAYSLTMA VIIPASGWLA DKFGTRTIFQ IAIVLFVAGS LLCAAAPSLP FLTAARVVQG
AGGAMLLPVG RLSVLRTFPR EQYLQALSFV AIPGMIGPLI GPTLGGWITQ TFSWHWIFLI
NVPVGLLGVL ATIRYMPNSR LPGIGTFDAV GYAFLAIAMV TLSFSLDGLA EMGFQHATVL
MLLIASMAAL SAYVLHANKR KQPLFPLRLF RIHSFSVGLL GNLFARIGNG AMPFLIPLTL
QVSLGYSPFD AGLMMLPVTA AGMASKRLAT WLIERHGYRR VLVTNTFVVG LVMASFALIT
PTRPLALIVV LLAIFGAVNS IQFTAMNTVT LKDLSGTRAS SGNSMLSMVQ MLSMSLAVTS
AGALLATFQE GIGEHHLDVL PAFHATFVCV GLITSASAWI FMQLSPEKAE RHKAREDVKQ
GGEV
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