| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_4818 |
|---|
| Symbol | nirB |
|---|
| ID | 4041680 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cupriavidus metallidurans CH34 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007974 |
|---|
| Strand | + |
|---|
| Start bp | 1465717 |
|---|
| End bp | 1468278 |
|---|
| Gene Length | 2562 bp |
|---|
| Protein Length | 853 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637980239 |
|---|
| Product | assimilatory nitrite reductase (NAD(P)H-binding) large subunit precursor |
|---|
| Protein accession | YP_586949 |
|---|
| Protein GI | 94313740 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1251] NAD(P)H-nitrite reductase |
|---|
| TIGRFAM ID | [TIGR02374] nitrite reductase [NAD(P)H], large subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.601986 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGATCA TCATCGTCGG GCATGGCATG GTCGGCCACA AGTTCCTGGA ATGCCTCGCG
GACGCCGGCG CGAAGGACCT CGATGTGACG GTGCTTTGCG AGGAGCCCCG CCCCGCCTAC
GATCGCGTCC ACCTGTCCGA GTTCTTCGCC GGCAAGTCCG CCGAGGATCT GTCGCTGGTG
CCTGAAGGCT TCTTCGCCCA GCACAACAAC ATGCTGCTGC GCCTGAACGC GAAGGCCACG
GCCATCGACA CAGCCGCGAA GACGGTCACC ACCGCCACCG GCGAGACGCT CGGCTACGAC
AAGCTCGTGC TCGCCACCGG CTCCTATCCG TTTGTACCTC CGCTGCCCGG CAAGGATCGC
AAGGACACTT TCGTCTACCG CACGATCGAG GACCTCGAGG CGATGCTCGA ATGCGGCCAG
CGCGCGACGT CGGGCGTGGT GATCGGCGGC GGCCTGCTTG GCCTGGAGTG CGCCAAGGCG
CTGCGCGACA TGGGTCTGCA GACCCACGTT GTGGAGTTCG CCCCGCGCCT GATGGCGGTG
CAGGTCGATG ACGGCGGTGG CCGGATGCTG CGCCAGAAGA TCGAGGAACT GGGCGTGACG
GCGCACACCG GCAAGAACAC GCTGGAGATC GTCGATGGCA CCGAAGGCAC GCATCGCATG
AACTTCGCCG ATGGCACGCA CCTGGACACT GACATGATCG TGTTCTCGGC CGGCATCCGC
CCGCGCGACG AGCTGGCACG CGCCAGCGGC CTGACGATCG GCGTGCGCGG CGGCATCGTG
ATCGACAACA ACTGCCTGAC CTCGGACCCG CACGTCTACG CCATCGGCGA GTGCGCGCTG
TGGGACGGCA AGATCTATGG CCTGGTGGCC CCGGGCTACG ACATGGCCCG CGTAGCCGCC
CGGCATCTGC GCGGCGAAGC CTCGGAGTTC GCTGGCGCCG ACATGAGCAC CAAGCTCAAG
CTGATGGGCG TGGACGTGGC CAGCATCGGC GACCCGCACG GCAACGAACC GGGTAGCCGC
TCATACCAGT TCACCGACGA ACGCAAGCAG ATCTACAAGA AGCTGGTGGT ATCCGAGTGC
GGGAAGTTCC TGCTCGGCGG CGTGCTGGTT GGCGATGCCG CCGAGTACGG CACGCTGCTG
CAGATGATGC TGAACCGGAT CGAACTGCCG GAATCTCCGG AGTTCCTGAT CCTTCCTGCC
TCCGATGGAA AGGCCCGGCC TGCGCTCGGC GCCGACGCGC TGCCGGATAC CGCCCAGATC
TGCTCGTGCA ACAACGTCAG CAAGGGCGAG ATCTGCGGCG CCGTGTGCGA TGGCGCCACC
ACCATCGGCG CGCTGAAATC GTGCACCAAG GCCGGCACCG CGTGCGGTGG CTGCGTGCCG
CTGGTCACGC AGATCATGAA GGCGGAAATG AAAAAGCAAG GCATGGCCGT GAACAACCAT
GTCTGCGAGC ACTTTCCGTA CTCGCGTCAG GAGCTGTACC ACCTGGTGCG CGTCGGCAAG
TTCAAGTCCT TCGACGACCT GCTGGCCGCG CACGGCTCCG GGCTGGGTTG CGACATCTGC
AAGCCGACCG TCGGCAGCAT CCTGGCGTCG TGCTGGAACG AATTCGTGCT CAAGGAAGAA
CATGCCAGCC TGCAGGATTC GAACGATTAC TTCCTGGCCA ACATCCAGAA AGACGGCACC
TACTCGGTGG TCCCGCGCAT GCCCGGCGGC GAAGTCACGC CCGATGGCCT GATCGCGGTC
GGGCAGATCG CAAAGAAGTA CGGTCTCTAC ACCAAGATCA CTGGCGGCGC GCGGGTCGAC
ATGTTCGGCG CGCGGCTGGA GGAACTGCCG CTGATCTGGG AAGAACTGAT CGCGGCCGGC
TTCGAATCGG GCCATGCCTA CGGCAAATCG TTGCGCACGG TGAAATCGTG CGTGGGCTCC
ACGTGGTGCC GCTATGGCGT GGACGACTCC GTCGGCCTGG CCATCGACAT CGAGAACCGC
TACAAGGGCC TGCGCGCGCC GCACAAGATC AAGTTCGGCG TCTCGGGCTG CACGCGCGAA
TGCGCCGAGG CGCAAGGCAA GGACGTTGGC ATCATCGCCA CGGAGCGCGG CTGGAACCTC
TACGTGTGCG GCAACGGCGG CATGAAGCCA CGCCATGCCG AACTGCTGGC GGGCGATCTG
GACCGCGAAA CGCTGATCCG TTACGTCGAC CGCTTCCTGA TGTTCTACGT GCGCACAGCG
GACCGCCTGC AACGCACCAG CACGTGGCGC GACAACCTCG AAGGCGGCCT GGATTACCTG
AAGTCCGTGA TCATCGACGA CAAGCTCGGC ATCGGCGCCG AACTCGAAGC CGAGATGCAG
CACGTGGTGG ATACGTACGA AGACGAGTGG AAGCGCGCCG TCACCGACCC CGAGACGCGC
AAGCGCTTCC GCCACTTCGT CAACAGCGAC CTGCGCGACG ACAACCTCAT GTTCCTGGAG
GAGCGTGGCC AGGTTCGCCC CGCCACGCAG GAGGAACGAA ACTTGCAACG TTCCCGCCTG
AGCCACATCC CCGTGGTTGC CGTGCCCGCA AAAGCAGCGT GA
|
|---|
| Protein sequence | MKIIIVGHGM VGHKFLECLA DAGAKDLDVT VLCEEPRPAY DRVHLSEFFA GKSAEDLSLV
PEGFFAQHNN MLLRLNAKAT AIDTAAKTVT TATGETLGYD KLVLATGSYP FVPPLPGKDR
KDTFVYRTIE DLEAMLECGQ RATSGVVIGG GLLGLECAKA LRDMGLQTHV VEFAPRLMAV
QVDDGGGRML RQKIEELGVT AHTGKNTLEI VDGTEGTHRM NFADGTHLDT DMIVFSAGIR
PRDELARASG LTIGVRGGIV IDNNCLTSDP HVYAIGECAL WDGKIYGLVA PGYDMARVAA
RHLRGEASEF AGADMSTKLK LMGVDVASIG DPHGNEPGSR SYQFTDERKQ IYKKLVVSEC
GKFLLGGVLV GDAAEYGTLL QMMLNRIELP ESPEFLILPA SDGKARPALG ADALPDTAQI
CSCNNVSKGE ICGAVCDGAT TIGALKSCTK AGTACGGCVP LVTQIMKAEM KKQGMAVNNH
VCEHFPYSRQ ELYHLVRVGK FKSFDDLLAA HGSGLGCDIC KPTVGSILAS CWNEFVLKEE
HASLQDSNDY FLANIQKDGT YSVVPRMPGG EVTPDGLIAV GQIAKKYGLY TKITGGARVD
MFGARLEELP LIWEELIAAG FESGHAYGKS LRTVKSCVGS TWCRYGVDDS VGLAIDIENR
YKGLRAPHKI KFGVSGCTRE CAEAQGKDVG IIATERGWNL YVCGNGGMKP RHAELLAGDL
DRETLIRYVD RFLMFYVRTA DRLQRTSTWR DNLEGGLDYL KSVIIDDKLG IGAELEAEMQ
HVVDTYEDEW KRAVTDPETR KRFRHFVNSD LRDDNLMFLE ERGQVRPATQ EERNLQRSRL
SHIPVVAVPA KAA
|
|---|
| |