| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_4790 |
|---|
| Symbol | |
|---|
| ID | 4041652 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cupriavidus metallidurans CH34 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007974 |
|---|
| Strand | - |
|---|
| Start bp | 1434297 |
|---|
| End bp | 1435787 |
|---|
| Gene Length | 1491 bp |
|---|
| Protein Length | 496 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 637980211 |
|---|
| Product | NodT family outer membrane lipoprotein |
|---|
| Protein accession | YP_586921 |
|---|
| Protein GI | 94313712 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1538] Outer membrane protein |
|---|
| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.031941 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.791068 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAAACGCT TTGCCCGTGC CTCGCTGGCG GCGATGTTGC CGCTTGCGCT GGCCGCTTGC
ATGACCGTCG GCCCTGATCA CAAGGTGCCC GACGATGCGG TCGTGAAGTC ATCGGCCGCC
AATGGACCGT TTGCCGGCAC CGACAGCGAT GCGGTGTCGA TCGGCGACGT TCCGAACGAC
TGGTGGCGTC TGTACGACGA TCCCCGTATC GACGAGCTGG TGCAGCAAGC GCTGGTGGCC
AACACCGACC TGCGTGTGGC CGCCGCCAAT CTGAAGCGCT CGATCGCCGT GTATCACGAG
GTGGAAGCCG AGAATCTGCC GGAAACGAAG TTCCGGGCCA GTGCGGAGCG CGGCCAGATC
GCTGGCGAAC CGCTGCTGCA CGAAGAGAAG ATTCCGGTGA TGAACTTCGG CGACATTGGT
CTCAATGTTT CGTACCTGAT TGACTTCTGG GGCAAGCTCA AGCGTGCCGA CGAAGCCGCC
TTGGCATCGG CGCAGGCCAG CCATGCGGCG CTGGACCAAG CTCGTGTGGG CGTGGTGGCG
GAGACCGTGC GTGCGTATGT GCAAGGATGC ACAGCCACGC ACGAACTACA TGTGGCCGCG
CATCAGCTCG ACCTGCAGGA ACGCGGCGTG AAGCTGGCGC AGAAACTGGT CGATGCTGGC
CGAGGTCAGC CGACCGATCT GCTGCGCGCC GAGGCGCAAG CCGACACCCT GCGTTCGGCA
CTGCCGAAGT ATCGTGCGGA GCAGGAAGGC GCGGCATACC GCCTGGCGGT AATGCTGGGC
AAGCCGCCGA CTGCGCTCGA TGTCAGCAGC GTGGCGTGCG AGCACGTACC GGCGTTGAAG
CAGGCGCTGC CCGTTGGCGA TGGCATGGCG CTGCTCAAGC GCCGACCGGA CGTTCGCCAG
GCCGAGCGCG AGCTGGCATC GGCAACGGCC AAGATCGGCG TGGCTACCGC TGACCTGTTC
CCGCAGATTC GCATCGGTGC ATCGGCAGGT TTCACCGGTA TCCTCGACCA CCTTGGTCAG
GCGCCGACCG CGCACTGGGG CTGGGGCCCC GCGATCTCGT GGACGATCCC GACCAGCGGC
ACGCGCGCGC GCATCCACAA CATGGAGTAC GGGGCCGAAG GGGCGCTGGC TCATTTCGAC
GGCGTGGTGC TGAAGGCGCT GCGCGAGACG CAGACTGCGC TGTCGGCCTA TACGCACGAA
CTGGACCGGA ACGCGTCGCT GCGCTCGGCG CGCGACAAGG CCAATGAGGC AGCCCGCCAG
AACCGGCTGC TGTGGCAGGC AGGCCGATCG CCGTATCTGC AGAGCCTGGA TGCCGACCGC
ACGCTGGCCA ATACCGATGC CGCGCTGGCC GCATCCGACG CGCAGGTTGC GATGGATCAG
ATCAACCTGT TCCTGGCGCT TGGTGGTGGA TGGCAGGATG CGCCGGCCAT TGCCAGTCAT
CCGGTGGGCA AGGAGCCCGG ACAGGCCACG GAACACACCG AGGAGCACTG A
|
|---|
| Protein sequence | MKRFARASLA AMLPLALAAC MTVGPDHKVP DDAVVKSSAA NGPFAGTDSD AVSIGDVPND
WWRLYDDPRI DELVQQALVA NTDLRVAAAN LKRSIAVYHE VEAENLPETK FRASAERGQI
AGEPLLHEEK IPVMNFGDIG LNVSYLIDFW GKLKRADEAA LASAQASHAA LDQARVGVVA
ETVRAYVQGC TATHELHVAA HQLDLQERGV KLAQKLVDAG RGQPTDLLRA EAQADTLRSA
LPKYRAEQEG AAYRLAVMLG KPPTALDVSS VACEHVPALK QALPVGDGMA LLKRRPDVRQ
AERELASATA KIGVATADLF PQIRIGASAG FTGILDHLGQ APTAHWGWGP AISWTIPTSG
TRARIHNMEY GAEGALAHFD GVVLKALRET QTALSAYTHE LDRNASLRSA RDKANEAARQ
NRLLWQAGRS PYLQSLDADR TLANTDAALA ASDAQVAMDQ INLFLALGGG WQDAPAIASH
PVGKEPGQAT EHTEEH
|
|---|
| |