| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_4711 |
|---|
| Symbol | gspE |
|---|
| ID | 4041572 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cupriavidus metallidurans CH34 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007974 |
|---|
| Strand | - |
|---|
| Start bp | 1353164 |
|---|
| End bp | 1354870 |
|---|
| Gene Length | 1707 bp |
|---|
| Protein Length | 568 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637980132 |
|---|
| Product | type II secretion system protein E |
|---|
| Protein accession | YP_586842 |
|---|
| Protein GI | 94313633 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACCCGA TCGGCACGCA TCCGGAGCAG CATGGGGGGA CCACCCTCCG CGCAACGCTG
CGCGAACTCG CGGCGTCCTA CGGGTCGGGC ACCCGCGCGC TGGAAGCGTA TATGTCCCAG
AGCGGCGTGG GCGCGGACGA GAGCCTTGCC GAGCTGGCAA GCGCCTTCCG GATGGAGCCC
ATCGGCATTC GCGACCTGCA GGAGATGGAG CCAGACTTCG AGATCATTCC ATTCGTCGAG
GCCGTGGCAC GCCTGTGTGT TTGCTTCCGG TCCGGGGACG GGCTCGTGTT CGTGATCGCG
GACCCGCTCG ATGCGCAGTC GCGCGGGCGG GTTGACCAGC GGATGCGTGC CCGGCCGCAC
GTGCGTTACG AATGGCGCCT GGCGACCGTC GGCGACGTGA CGGCCTATCT TGCGGCGCGT
GAGAAAGACG TCCACGCGCT GGATACCGTT GCCTTCGAGG AACTGGAGCA CCGCGCGGCG
GAATCGTCCG CGCTGGCGCT GAGTCTGCAG GGCATCAGCA ATGACGACAG CTCGGTCGTC
AGGTTGCTCA ATTCGACCAT CTATGACGCC TTGAAGATGC AGGCCAGCGA TATCCATCTG
GAATGCCGCG CTAACGGCCT GGTGATCAAG TGCCGCATCG ACGGCGTGCT GGCGGTGGTG
GGCAGGGTCG ACGGACGCGC ACCCGCCGAT CAGGTGCTGT CGCGTGTCAA GGTCATCTCG
GAACTCGATA TCGCCGAGCG GCGCGTGCCG CAGGATGGTC GCTTCAAGGC GCAGTATGCC
GGGCGGGAGA TCGACTTCCG CGTATCGATC ATGCCGAACC TGTTCGGGGA GGACGCCGTC
CTGCGCATTC TGGACCGCTA CCAGCTATCG CAGTCCGCGC AGGGCCTGAC GCTCGAAACA
CTGGGTTTTC AGGCTGCCGA TACCGGTTTC ATGCGGTCGG TGGCGTCAAT GCCTTATGGC
ATGTTGCTGG TGACCGGCCC AACCGGTAGC GGCAAGACCA CGACGCTGTA CGCCATCCTG
ACCGAGATAA ACGATGGTCT GGACAAGATC GTGACCATCG AGGACCCGGT CGAGTACCAG
CTCGGGGACA TCCTGCAGAT CCCGGTCAAC GAGGCCAAGG GCCTGACCTT CGCGCGTGGC
CTGCGCTCCA TCCTGCGTCA TGACCCGGAC AAGATCATGG TGGGCGAGAT CCGCGATGCG
GAGACCGCGC AGATCGCGGT GCAGGCGGCG CTGACCGGAC ACCAGGTGTT CACGACCGTC
CACGCGAACA ACGTGTTCGA CGTGATCGGT CGTTTCACGA ACATGGGGGT GGATCCATAC
AGCTTCGTCT CGGCGCTGAA TGGCGTGGTC GCCCAACGGC TGGTGCGCAA GTGTTGCGAT
GGCTGCGTGG TCGAGGAAGC CGGTGATCGG GACTTGCTGG CACGATCTGG CATCGACCCG
GACATGGCGG ACGGGTTCCG CTTCCGGCGC GGACTGGGTT GCGCGGCCTG CCGTGGCAGT
GGCTATCGTG GCCGGCGCGC GATTGCGGAA GCGCTGCGGA TGAACGACGA ACTCCGGGCG
CTGCTCTCGG AGCGCGCGCC ACTTGCGCGC ATCAAGAGCG TGGCACTGCG GCAAGGTATG
CAAACGCTGC GCAAGGCCGC GATCGAGATG GCGGCCGCAG GGGAAACAAC GCTCGAGGAG
ATCAATCGTG TCACGATCTC CGAGTAA
|
|---|
| Protein sequence | MDPIGTHPEQ HGGTTLRATL RELAASYGSG TRALEAYMSQ SGVGADESLA ELASAFRMEP
IGIRDLQEME PDFEIIPFVE AVARLCVCFR SGDGLVFVIA DPLDAQSRGR VDQRMRARPH
VRYEWRLATV GDVTAYLAAR EKDVHALDTV AFEELEHRAA ESSALALSLQ GISNDDSSVV
RLLNSTIYDA LKMQASDIHL ECRANGLVIK CRIDGVLAVV GRVDGRAPAD QVLSRVKVIS
ELDIAERRVP QDGRFKAQYA GREIDFRVSI MPNLFGEDAV LRILDRYQLS QSAQGLTLET
LGFQAADTGF MRSVASMPYG MLLVTGPTGS GKTTTLYAIL TEINDGLDKI VTIEDPVEYQ
LGDILQIPVN EAKGLTFARG LRSILRHDPD KIMVGEIRDA ETAQIAVQAA LTGHQVFTTV
HANNVFDVIG RFTNMGVDPY SFVSALNGVV AQRLVRKCCD GCVVEEAGDR DLLARSGIDP
DMADGFRFRR GLGCAACRGS GYRGRRAIAE ALRMNDELRA LLSERAPLAR IKSVALRQGM
QTLRKAAIEM AAAGETTLEE INRVTISE
|
|---|
| |