| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_4663 |
|---|
| Symbol | |
|---|
| ID | 4041524 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cupriavidus metallidurans CH34 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007974 |
|---|
| Strand | - |
|---|
| Start bp | 1296546 |
|---|
| End bp | 1297361 |
|---|
| Gene Length | 816 bp |
|---|
| Protein Length | 271 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 637980084 |
|---|
| Product | putative spermidine synthase |
|---|
| Protein accession | YP_586794 |
|---|
| Protein GI | 94313585 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0421] Spermidine synthase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 35 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.616274 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATTCCC AACGCGCCTC TTTGAGAGAG TACCTACGGT TTCTAGCTAC AGTCACCAAC
GATGGGAAGC CTGTAGTACT GGAGACGGAG CAGGCACTTT CGCTCCATTT CGACATACAC
GCGACGCAGA GCCTCATGTC TGTGCGCGAC CCCAACAAGC TCGTGCTCGG CTATACACGC
ACGATGATGA GTTTTCTGCT GCTGCAGCCG ACGCCGTCAC GTATCTCCAT GATCGGCCTA
GGTGGGGGAT CCCTTGCCAA ATACTGCTAC CACCATCTTC CCAGTGCGAA GGTGGTGGCA
ATTGAGATTG ACCCGGCAGT GATTGCCTTG CGCGACAAGT TCCAGATTCC GCAGGATGAC
GACCGGTTCG AAGTCATCTG CGCGGATGGC GCGGAGTATG TCAAGGGACA GGATGCTCGA
CCCGATGTCA TTCTGGTGGA CGGGTTTCTG GCGCACGGCA TGCCTGCACA ACTCGGAACA
ATCGCCTTCT ACTCGGCCTG CCATGCGCGG CTTGCCGACG ATGGCGTCCT CGTCGCCAAT
TTCTTGGAGA ACGACAGGGA CATCCCCTTC TATCTCGAAG AGATTCGCTC CGTATTCGGT
GATTCGTTTT CCGTGTCGCT GACCGAAGAT AGCTGTAATT ACACGTTGAT CGCGTGGAAG
GGAACATGGG AGCTCCCTTC GCTGGATACG CTGGTCACGC GTGCGCGCCA GCTCGAGACC
TCGCACCCCT TGAACCTGCG CTCGGCCGCC AGCCGTCTGA AGCGTGGCAG ACACCTCGCG
TCTGACCATA CGTACTGGCA GAGGCTGACA AGATAG
|
|---|
| Protein sequence | MNSQRASLRE YLRFLATVTN DGKPVVLETE QALSLHFDIH ATQSLMSVRD PNKLVLGYTR
TMMSFLLLQP TPSRISMIGL GGGSLAKYCY HHLPSAKVVA IEIDPAVIAL RDKFQIPQDD
DRFEVICADG AEYVKGQDAR PDVILVDGFL AHGMPAQLGT IAFYSACHAR LADDGVLVAN
FLENDRDIPF YLEEIRSVFG DSFSVSLTED SCNYTLIAWK GTWELPSLDT LVTRARQLET
SHPLNLRSAA SRLKRGRHLA SDHTYWQRLT R
|
|---|
| |