| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_4479 |
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| Symbol | livF3 |
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| ID | 4041338 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cupriavidus metallidurans CH34 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007974 |
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| Strand | + |
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| Start bp | 1079082 |
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| End bp | 1079786 |
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| Gene Length | 705 bp |
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| Protein Length | 234 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 637979901 |
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| Product | high-affinity branched-chain amino acid ABC transporter ATP binding protein |
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| Protein accession | YP_586613 |
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| Protein GI | 94313404 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0410] ABC-type branched-chain amino acid transport systems, ATPase component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.00225011 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.00953157 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGATGCTCG ACGTACAGGA TATTCATGGC TACTACGGCA AGAGCCATGT ACTGCAAGGC
GTCTCCCTTG CCATTGGCGA CGGAGAACTG GTCACGCTAC TGGGCCGCAA CGGCGCCGGC
AAATCGACAA CCTTGAAGGC AATTGCCGGC ATCGTGCCCC CACGCGGCGG GCGTGTGCTG
TTTCATGGCA AGGACATTGC GGGAATGGCC CCGCACCGGA TCGCGCGCGA AGGCCTGTGC
TTCGTACCGG AGCACCGGGG CATCTTCAAG CTGCTGACCG TCGAGGAGAA CCTGAAGCTG
GCGGCAAGGA AGGCGTCGCC ATGGCAGCTT GAGGATGTCT ACCGGATTTT CCCGCGTCTT
CGCGAGCGGC GCCGCAATGG TGGCGCGCAG CTTTCCGGGG GCGAGCAGCA GATGCTCGCG
ATCGGCCGGG CCCTGATGAA TCATCCGCGC CTGCTCATGC TCGACGAGCC CGTGGAGGGT
CTGGCCCCGG TTATCGTCGA AGAGATCGTC GCACAGCTCA AGGTCATCAA GGCCGCGGGC
GTCCCCATTC TTCTGGTGGA GCAGAACCTT GAGGTCTGCA TGCAGCTTGC TGACAGGCAT
GTGGTGATCG AGCAGGGAAG GGTGGTCTAC ACCGGCGGCA ACGAGGAGTT CCGCCGCAAC
GACGCGGTCA AGGACAAGTA CCTCGGCGTC GGCCTTACCG TCTGA
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| Protein sequence | MMLDVQDIHG YYGKSHVLQG VSLAIGDGEL VTLLGRNGAG KSTTLKAIAG IVPPRGGRVL
FHGKDIAGMA PHRIAREGLC FVPEHRGIFK LLTVEENLKL AARKASPWQL EDVYRIFPRL
RERRRNGGAQ LSGGEQQMLA IGRALMNHPR LLMLDEPVEG LAPVIVEEIV AQLKVIKAAG
VPILLVEQNL EVCMQLADRH VVIEQGRVVY TGGNEEFRRN DAVKDKYLGV GLTV
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