| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_4474 |
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| Symbol | tnpA |
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| ID | 4041333 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cupriavidus metallidurans CH34 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007974 |
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| Strand | + |
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| Start bp | 1072180 |
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| End bp | 1075146 |
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| Gene Length | 2967 bp |
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| Protein Length | 988 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 637979896 |
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| Product | transposase Tn6050 |
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| Protein accession | YP_586608 |
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| Protein GI | 94313399 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG4644] Transposase and inactivated derivatives, TnpA family |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.199867 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.00670356 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGCCACGTC GTTCAATCCT GTCCGCCGCC GAGCGCGAAA GCCTGCTGGC GTTGCCGGAC
ACCAAGGATG AGTTGATCCG TCACTACACG TTCAGCGAAA CCGACCTCTC CATCATCCGG
CAGCGGCGCG GCCCGGCCAA CCGGCTGGGC TTCGCCGTGC AGCTCTGTTA CCTGCGCTTT
CCTGGTGTCA TCCTGGGCGT CGATGAGCCG CCGTTTCCGC CCTTGTTGAA ACTGGTCGCC
GACCAGCTCA AGGTCAGCGT CGAAAGCTGG GACGAATACG GGCAGCGGGA GCAGACCCGG
CGCGAGCACC TGGTCGAACT GCAAACGGTG TTCGGCTTCC AGCCCTTTAC CATGGGCCAC
TACCGGCAGG CCGTCCAGTT GCTGACCGAG ATGGCCTTGC AGACCGACAA GGGCATCGTG
CTGGCCAGCA CCTTGATCGA GCACCTGCGG CAGCAGTCGG TCATTCTGCC TGCCCTCAAC
GCCGTCGAGC GGGCGAGCGC CGAAGCAATC ACCCGCGCCA ACCGGCGCAT CTACGATGCC
TTGGCCGAAC CGCTGTCGGA CGCGCATCGC CGCCGCCTCG ACGATCTGCT CAAGCGTCGG
GACAACGGCA AAACGACCTG GCTGGCCTGG CTGCGCCAAT CGCCCGTCAA ACCGAATTCG
CGGCACATGC TGGAACACAT CGAACGCCTC AAAGCGTGGC AGGCGCTCGA CCTGCCTTCT
GGCATCGAGC GGTCGGTGCA CCAGAACCGC CTGCTCAAGA TCGCCCGTGA GGGTGGCCAG
ATGACGCCCG CCGACCTGGC CAAGTTCGAG GCGCAGCGAC GCTATGCCAC CCTGGTGGCG
CTTGCCATCG AGGGCATGGC CACCGTCACC GACGAAATCA TCGACCTGCA CGACCGCATC
CTGGGCAAGC TGTTCAACGC CGCCAAGAAC AAGCATCAGC AGCAATTCCA GGCGTCCGGC
AAGGCGATCA ACGCCAAGGT GCGGCTGTTC GGCCGCATCG GCCAGGCGCT GATCGAGGCC
AAGCAGGCGG GCCGCGATCC GTTCGCCGCC ATCGAGGCCG TCATGTCCTG GGATGCCTTC
GCCGAGAGCG TCACCGAAGC GCAGAAGCTT GCGCAGCCCG AGGACTTCGA TTTCCTGCAC
CGCATCGGCG AAAGCTACGC CACGCTGCGC CGCTACGCGC CGGAATTCCT TGCCGTGCTC
AAGCTGCGGG CCGCTCCCGC CGCGAAGGAC GTGCTCGACG CCATCGAGGT GCTGCGCGGC
ATGAACAGCG ACAACGCCCG CAAGGTGCCC GCCGACGCGC CGACCGAGTT CATCAAGCCG
CGCTGGCAGA AGCTGGTCAT GACCGACACC GGCATCGACC GGCGCTACTA CGAACTGTGC
GCGCTGTCGG AGATGAAGAA CGCGTTGCGT TCCGGCGACA TCTGGGTGCA GGGGTCGCGC
CAGTTCAAGG ACTTCGAGGA CTACCTGGTG CCGCCCGCGA AATTCGCCAG CCTCAAGCAG
GCCAGCGAAT TGCCGCTGGC CGTGGCCACC GACTGCAACC GGTACCTGAA CGACCGGCTG
ACGCTGCTGG AAACACAGCT TGCCACCGTC AACCGTATGG CGACGGCCAA CGAGCTGCCG
GACGCCATCA TCACCGAGTC AGGCTTGAAG ATCACGCCGC TCGACGCGGC GGTACCCGAC
ACCGCCCAAG CGCTGATCGA CCAGACGGCA ATGATCCTGC CGCACGTCAA GATCACCGAA
CTGCTGCTGG AGGTGGACGA ATGGACGGGC TTCACTCGGC ATTTCGCGCA TCTGAAATCG
GGCGACCCGG CCAAAGACAA GAACCTGTTG CTGACCACGA TCCTCGCCGA CGCGATCAAC
CTGGGCCTGA CCAAGATGGC GGAGTCTTGC CCCGGCACGA CCTACGCCAA GCTGGCTTGG
CTGCAAGCCT GGCACATCCG CGACGAAACC TACGGGGCGG CGCTGGCCGA TCTGGTCAAC
GCACAGTTCC GCCATCCCTT CGCCGAGCAC TGGGGCGACG GCACCACCTC ATCGTCGGAC
GGCCAGAACT TCCGCACCGG CAGCAAGGCC GAGAGCACCG GCCACATCAA CCCGAAATAC
GGGAGCAGCC CAGGGCGGAC GTTCTACACC CACATTTCTG ACCAGTACGC GCCATTTCAC
ACCAAGGTCG TGAACGTCGG CGTGCGCGAT TCGACCTACG TGCTCGACGG CCTGCTGTAC
CACGAGTCCG ACTTGCGGAT CGAGGAGCAT TACACCGACA CGGCGGGCTT CACCGATCAC
GTCTTCGCCC TGATGCACCT CCTGGGCTTC CGCTTCGCGC CGCGCATCCG CGACCTGGGC
GACACCAAGC TCTACATCCC GAAGGGCGAC GCCGCCTATG ACGCGCTGAA ACCCATGATC
GGCGGCACGC TCAACATCAA GCACGTCCGC GCCCATTGGG ACGAAATCCT GCGGCTGGCC
ACCTCGATCA AGCAGGGCAC GGTGACGGCC TCCCTGATGC TCCGAAAGCT CGGCAGCTAC
CCACGCCAGA ACGGCCTGGC CGTGGCGCTC CGCGAGCTGG GCCGCATCGA GCGCACGCTG
TTCATCCTGG ACTGGCTGCA AAGCGTGGAA CTGCGCCGCC GCGTGCATGC CGGCCTGAAC
AAGGGCGAGG CGCGCAATGC GCTGGCCAGG GCAGTGTTTT TCAACCGCCT GGGTGAAATC
CGCGACCGCA GTTTCGAGCA GCAGCGCTAC CGGGCTAGCG GCCTCAATCT GGTAACGGCT
GCCGTCGTGT TGTGGAACAC GGTCTATCTG GAACGGGCTG CGCACGCGCT GCGTGGCAAC
GGCCATGCCG TTGATGACGC GCTGTTGCAG TACCTGTCGC CGCTCGGTTG GGAGCACATC
AACCTCACCG GCGATTACCT CTGGCGCAGC AGCGCCAAGA TCGGCGCGGG CAAGTTCAGG
CCGCTACGAC CGCTGCAACC GGCTTAG
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| Protein sequence | MPRRSILSAA ERESLLALPD TKDELIRHYT FSETDLSIIR QRRGPANRLG FAVQLCYLRF
PGVILGVDEP PFPPLLKLVA DQLKVSVESW DEYGQREQTR REHLVELQTV FGFQPFTMGH
YRQAVQLLTE MALQTDKGIV LASTLIEHLR QQSVILPALN AVERASAEAI TRANRRIYDA
LAEPLSDAHR RRLDDLLKRR DNGKTTWLAW LRQSPVKPNS RHMLEHIERL KAWQALDLPS
GIERSVHQNR LLKIAREGGQ MTPADLAKFE AQRRYATLVA LAIEGMATVT DEIIDLHDRI
LGKLFNAAKN KHQQQFQASG KAINAKVRLF GRIGQALIEA KQAGRDPFAA IEAVMSWDAF
AESVTEAQKL AQPEDFDFLH RIGESYATLR RYAPEFLAVL KLRAAPAAKD VLDAIEVLRG
MNSDNARKVP ADAPTEFIKP RWQKLVMTDT GIDRRYYELC ALSEMKNALR SGDIWVQGSR
QFKDFEDYLV PPAKFASLKQ ASELPLAVAT DCNRYLNDRL TLLETQLATV NRMATANELP
DAIITESGLK ITPLDAAVPD TAQALIDQTA MILPHVKITE LLLEVDEWTG FTRHFAHLKS
GDPAKDKNLL LTTILADAIN LGLTKMAESC PGTTYAKLAW LQAWHIRDET YGAALADLVN
AQFRHPFAEH WGDGTTSSSD GQNFRTGSKA ESTGHINPKY GSSPGRTFYT HISDQYAPFH
TKVVNVGVRD STYVLDGLLY HESDLRIEEH YTDTAGFTDH VFALMHLLGF RFAPRIRDLG
DTKLYIPKGD AAYDALKPMI GGTLNIKHVR AHWDEILRLA TSIKQGTVTA SLMLRKLGSY
PRQNGLAVAL RELGRIERTL FILDWLQSVE LRRRVHAGLN KGEARNALAR AVFFNRLGEI
RDRSFEQQRY RASGLNLVTA AVVLWNTVYL ERAAHALRGN GHAVDDALLQ YLSPLGWEHI
NLTGDYLWRS SAKIGAGKFR PLRPLQPA
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