| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_4374 |
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| Symbol | hmgA |
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| ID | 4041232 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cupriavidus metallidurans CH34 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007974 |
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| Strand | + |
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| Start bp | 972562 |
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| End bp | 973890 |
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| Gene Length | 1329 bp |
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| Protein Length | 442 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 637979795 |
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| Product | homogentisate 1,2-dioxygenase |
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| Protein accession | YP_586508 |
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| Protein GI | 94313299 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG3508] Homogentisate 1,2-dioxygenase |
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| TIGRFAM ID | [TIGR01015] homogentisate 1,2-dioxygenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.0000328355 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.761675 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGACCCAGA CCCAACTCAA TGTGGCCGAC ACCGCCGTGG CGGAGTACAT GTCCGGTTTT
GCCAATGAGT TCGCCACGGA GGCGTTGCCC GGCGCGTTGC CGGTAGGACG CAACTCGCCG
CAGCGCGCGC CGTATGGCCT GTATGCCGAA CAGCTATCGG GCACCGCGTT CACCGCGCCG
CGCGCCCACA ATCGCCGTTC GTGGCTGTAT CGCATTCGCC CGGCAGCCAT GCACAAGCCG
TTCACGTTGA TCGAGCAGGA TCGTTGGCTG AGCCGCTTCG ACGAAGTGGC GCCATCGCCC
AATCAGATGC GCTGGAGTGC GCCGGCCATG CCGACCGTTC CCACCGACTT TGTCGATGGC
ATCGTCACGA TGGCTGGTAA CGGCGGTCCG GAAGCGCTGT CCGGGTGCGG GATCCATCTG
TATCTGGCCA ACGCGTCGAT GCGGGACCGC TTCTTCTACA ACGCCGATGG CGAAATGCTG
ATCGTGCCGC AGGAGGGCCG TCTGCTGATC GTCACCGAGA TGGGGCGCCT GGCGGTGGAG
CCGCAGGAGA TCGTGGTGAT CCCGCGCGGC GTGCGTTTCC GCGTGGAACT GCCCGACGGC
GCGGCGCGTG GCTATATCTG CGAAAACTAC GGCGCGATGT TCAAGCTGCC CGACCTCGGC
GTAATCGGCT CCAACGGGCT GGCCAACCCG CGTGATTTCC TGACGCCGGT CGCCAGCTAC
GAGGATCGCG AAGGCGACTT CGAACTGGTC GCCCGTTTCC AGGGCAATCT GTGGCGTGCC
GACATTGGCC ACTCGCCGCT CGATGTGGTG GCGTGGCACG GCAACTATGT GCCGTACAAG
TACGATCTGC GCCTCTTCAA CACGATCGGC TCGATCAGCT ACGACCATCC GGACCCGTCG
ATTTTCCTGG TGCTGCAATC GCCGTCGGAT ACGCCGGGCG TGGACACGAT CGACTTCGTG
ATCTTCGGCC CGCGCTGGCT GGCTGCGGAA GACACGTTCC GTCCGCCCTG GTTCCACCGC
AATATCGCCA GCGAATTCAT GGGTTTGATC GCGGGCGAGT ATGACGCCAA GGCCGAAGGC
TTTGTGCCGG GCGGGGCGAG CCTGCACAAC TGCATGAGCG GTCACGGCCC CGATGCGGAG
ACCTTCGAGC GTGCGTCCGC CTCTGACACC AGCAAGCCGC ACCACATCAC GGACACGATG
GCATTCATGT TCGAAACCCC GGGCGTGATC CGTCCGACGC GGCACGCTGC CGAGTCGGCG
CTGCTCCAGC ACGATTACTA CACCTGCTGG CAAGGCCTGA AGAAGCATTT CAACCCGAAC
GTGCGTTGA
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| Protein sequence | MTQTQLNVAD TAVAEYMSGF ANEFATEALP GALPVGRNSP QRAPYGLYAE QLSGTAFTAP
RAHNRRSWLY RIRPAAMHKP FTLIEQDRWL SRFDEVAPSP NQMRWSAPAM PTVPTDFVDG
IVTMAGNGGP EALSGCGIHL YLANASMRDR FFYNADGEML IVPQEGRLLI VTEMGRLAVE
PQEIVVIPRG VRFRVELPDG AARGYICENY GAMFKLPDLG VIGSNGLANP RDFLTPVASY
EDREGDFELV ARFQGNLWRA DIGHSPLDVV AWHGNYVPYK YDLRLFNTIG SISYDHPDPS
IFLVLQSPSD TPGVDTIDFV IFGPRWLAAE DTFRPPWFHR NIASEFMGLI AGEYDAKAEG
FVPGGASLHN CMSGHGPDAE TFERASASDT SKPHHITDTM AFMFETPGVI RPTRHAAESA
LLQHDYYTCW QGLKKHFNPN VR
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