| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_4365 |
|---|
| Symbol | cbbR3 |
|---|
| ID | 4041223 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cupriavidus metallidurans CH34 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007974 |
|---|
| Strand | - |
|---|
| Start bp | 962478 |
|---|
| End bp | 963428 |
|---|
| Gene Length | 951 bp |
|---|
| Protein Length | 316 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 637979786 |
|---|
| Product | LysR family transcriptional regulator |
|---|
| Protein accession | YP_586499 |
|---|
| Protein GI | 94313290 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.000557933 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.0730184 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGAACG CGACGCTTCG CCAGCTGAAA GTGTTCGAAA CAGTGGCCCG CCATCTGAGC
TTCTCACGCG CGGCGGAGGA GCTTCATCTC ACGCAACCTG CTGTTTCCAC ACAGGTTCGA
CAGCTCGAAC TCCATGTCGG CCTGCCCCTC TTCGAGCAGC TTGGAAAGCG CATCTACCTG
ACGCCGGCCG GCACCGAGAT GCTGCATTAC AGCCGATGCA TCATCCAGCA GTTCCGCGAG
GCCGAAGACG CGATGGCGCA GCTTAAGGGT ATATCCGGGG GCCGCCTCAA CGTCGCGGTT
ATCAGTGCCG GTGACTACTT CTTCCCCCGC CTGCTGGCCG AGTTCATGAA CCGGCACGAA
TCGGTCACGC TCAATCTTGC CGTGCACAAT CGCGAGGAAC TGCTGCATCA GCTAGCCGGC
AACCTGACCG ATCTGGCGGT GATGGTTCGC CCGCCGGAAG GCATGGATAC GATCGCCGAA
GCATTCGCCC CCCACCCCTA CGTGATTGTC GCCGCGCCGA ACCATCCGCT GGTGGACCAG
CGCAATATCC CGCTGGCTGA CCTGGCCGAG GAAGCATTCG TCTCGCGCGA GAAAGGCTCG
GACACCTGGA ATTCGATGCA GGAAGGCTTC GCGGGCCGCT TGTCGAACCT GCGCATCGCG
ATGGAGATCA AGAGCACCGA GACCATCAAG CAGGCGGTAA TCGCGAACAT GGGCATCGCC
TTCCTGTCAG CCCACACGGT GGGCCTGGAA CTTCAGGCCG GCAAGCTGGC CGTGCTCGAC
ATCCAGGGCT TCCCGGTGAT GCTCAACTGG TACGTGGTGC ACCGCAAAAA CAAGCGCCTG
CCACCCGTGG CCCTGGCATT CAAGCATTTC CTCATGGAAG AAGGCGCCAC GCTGATCCAG
CAGATCACTG GCGTGGAGGG GCTGATTCGC CCGCGCGCCA TCCATAAATG A
|
|---|
| Protein sequence | MKNATLRQLK VFETVARHLS FSRAAEELHL TQPAVSTQVR QLELHVGLPL FEQLGKRIYL
TPAGTEMLHY SRCIIQQFRE AEDAMAQLKG ISGGRLNVAV ISAGDYFFPR LLAEFMNRHE
SVTLNLAVHN REELLHQLAG NLTDLAVMVR PPEGMDTIAE AFAPHPYVIV AAPNHPLVDQ
RNIPLADLAE EAFVSREKGS DTWNSMQEGF AGRLSNLRIA MEIKSTETIK QAVIANMGIA
FLSAHTVGLE LQAGKLAVLD IQGFPVMLNW YVVHRKNKRL PPVALAFKHF LMEEGATLIQ
QITGVEGLIR PRAIHK
|
|---|
| |