| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_4360 |
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| Symbol | oxc |
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| ID | 4041218 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cupriavidus metallidurans CH34 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007974 |
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| Strand | + |
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| Start bp | 955561 |
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| End bp | 957483 |
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| Gene Length | 1923 bp |
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| Protein Length | 640 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 637979781 |
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| Product | thiamine pyrophosphate enzyme-like TPP binding region |
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| Protein accession | YP_586494 |
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| Protein GI | 94313285 |
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| COG category | [E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism |
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| COG ID | [COG0028] Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.0493016 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGGATGGG CTGCTTGCTG CGGTGCGTCG TTGAAAGTCG GCAGCGGCCA GCATTTTGTT
CTTGTTGTTT GGTGGTATAT CACATACCGT ATGTCATCAA GATCGGCTGC TTTCCGAAGC
GCAACGATCT GCGATCCGAC GATCCAGTCC AAACGAGGAG ACAAAGACAT GTCCGCTGTC
GTATCCACCC GGCCCGAGAC CACCACGGCT GAAGACACGC TGAAGCAAAA GTCCCGCGAC
GCGGGCGTCA TATCCGGCGG CCATCTGGTG GCTCGCGCCC TCAAGAACGA GGGGGTGGAT
ACGATCTTCA CGCTGTGCGG CGGGCACATC ATCGACATCT ACGACGGTTG CGTGGATGAG
GGCATTCGCA TCATCGACGT GCGCCACGAG CAGGTGGCCG CGCACGCAGC AGATGGTTAT
GCGCGCCAGA CCGGCAAGCT CGCCTGCGTT GTGACCACGG CAGGCCCTGG CTGCACGAAC
GCCGTCACGG GCGTGGCCAC CGCGTTCCGT TCGGAAAGCC CGATCATCCA TATCGGCGGC
CAAGGCGCGC TGTCCCAGCA CAAGATGGGA TCGTTGCAGG ATCTGCCGCA CGTGGACATG
ATGGCGCCGA TCACGAAGTT CGCGGCCACC ATCCCCAGCA CCGAGCGCGT GGCCGACATG
ATTGCGATGG CCGCCCGTGA GTGCTTCAAC GGCGCGCCGG GGCCGGCCTA CCTGGAAATC
CCGCGCGATG TGCTGGATCG TGAAGTCGAT GTATCGCGTG CCGTGATTCC GCGCCCGGGC
CACTATCGTG CCTCGACGAA GTCGATCGGC GATCCGCGCG ACATCGAGAA ACTGGCCGAC
ATCCTCGTCA ACGCCGAACG TCCGGCAATT CTCTATGGCC AGCAGGTCTG GACCGCGCGC
GGGCATGAGG AAGCTGTCGA CCTGCTGCGC GGTCTCGATA TCCCCGGCTA TTTCAACGGC
GCCGCACGTG GCCTGCTGCC CCCGGGCGAT CCGCATCACT TCGACCGCAC CCGTTCGCAG
GCATTCGCCA ATGCCGATGT GCTGGTGATC GTCGGCACGC CGTTCGACTT CCGCATGGGC
TACGGCAAGC GCATCAGCAA GGAAATCACG CTGGTGCAGA TCGACATGGA CTACCGCACG
GTGGGCAAGA ATCGCGAGAT CGATCTGGGC CTGGTGGGCG ATCCGGGCGC GATTCTTGGC
GCGGTGCTGC AGGCGGCCAG TGGCCGGATC AAGAACGATA AGCGCCTGGC GCGCAAGAAG
TGGATGGGTC AGTTGACGGA AGCCGAAGCT GTGGCCACGG AAAAGCTGAT GCCGCTGTTC
AAGTCGGAGA ACAAGCCGAT TCACCCGTAT CGCGTGGCCT ACGAACTCAA CGAGTTCCTG
GCCGACAACA CGATCTATAT CGGCGACGGT GGCGACGTGG TCACGATTTC CGCGCAGGCG
GTGCGTCCGC GCCGCCCGGG CCAGTGGATG GACCCGGGCG CGCTCGGATC GCTCGGTGTC
GGTACCGGCT TTGCGATTGC AGCGGGTGTG GCCAATCCAG GCAAGGAAGT GCTCTGCTAC
TACGGCGACG GATCGTTCGG CATGACCGCG TTCGACATGG AAACGGCCAA CCGCTTCGGC
GTGCCGTACC TGGCCGTCAT CGGCAATAAC TCGGCGATGA ACCAGATCCG CTACGGCCAG
CTTGCCAAGT ACGGCGACGA CCGTGGCAAT GTCGGCAACC TGCTGTCCGA CGTGCCGTTC
TCCAAGTTCG CCGAGATGCT GGGCGGATAC GGCGAGGAGG TGCGCGAGCC GGGCCAGATC
GCCGGTGCGC TGCAGCGCGG CCGCGAGTCG ATCGCGAAGA CCGGCAAGTC CGCCGTCATC
AATATCTGGG TGGACCCGCG CGAGTACGCG CCGGGCACAA AGAACCAGAC CATGTACAAG
TAA
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| Protein sequence | MGWAACCGAS LKVGSGQHFV LVVWWYITYR MSSRSAAFRS ATICDPTIQS KRGDKDMSAV
VSTRPETTTA EDTLKQKSRD AGVISGGHLV ARALKNEGVD TIFTLCGGHI IDIYDGCVDE
GIRIIDVRHE QVAAHAADGY ARQTGKLACV VTTAGPGCTN AVTGVATAFR SESPIIHIGG
QGALSQHKMG SLQDLPHVDM MAPITKFAAT IPSTERVADM IAMAARECFN GAPGPAYLEI
PRDVLDREVD VSRAVIPRPG HYRASTKSIG DPRDIEKLAD ILVNAERPAI LYGQQVWTAR
GHEEAVDLLR GLDIPGYFNG AARGLLPPGD PHHFDRTRSQ AFANADVLVI VGTPFDFRMG
YGKRISKEIT LVQIDMDYRT VGKNREIDLG LVGDPGAILG AVLQAASGRI KNDKRLARKK
WMGQLTEAEA VATEKLMPLF KSENKPIHPY RVAYELNEFL ADNTIYIGDG GDVVTISAQA
VRPRRPGQWM DPGALGSLGV GTGFAIAAGV ANPGKEVLCY YGDGSFGMTA FDMETANRFG
VPYLAVIGNN SAMNQIRYGQ LAKYGDDRGN VGNLLSDVPF SKFAEMLGGY GEEVREPGQI
AGALQRGRES IAKTGKSAVI NIWVDPREYA PGTKNQTMYK
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