Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rmet_4313 |
Symbol | emrB |
ID | 4041171 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Cupriavidus metallidurans CH34 |
Kingdom | Bacteria |
Replicon accession | NC_007974 |
Strand | - |
Start bp | 906714 |
End bp | 908273 |
Gene Length | 1560 bp |
Protein Length | 519 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 637979734 |
Product | EmrB/QacA subfamily drug resistance transporter EmrB/QacA subfamily |
Protein accession | YP_586447 |
Protein GI | 94313238 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2814] Arabinose efflux permease |
TIGRFAM ID | [TIGR00711] drug resistance transporter, EmrB/QacA subfamily |
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Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 0.221142 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCAAATC CGATGACAAG CGAATTACCG CCGCCGCTGA CCGGTGGCAA GCTGGCAATG GGCAGTCTGG CCGTCGCGCT GGCCACATTC ATGAACGTGC TGGATTCATC CATTGCCAAT GTCGCCATCC CGACTATCTC TGGCAACCTC GGCGTCTCCG TGGATGAAGG CACTTGGGTG ATCACGCTGT TCGCGGCCGC CAATGCGGTA GCCATTCCAC TGACGGGGTG GCTGACCCAG CGCGTGGGGC AGATCCGTCT GTTCGTGGGA TCGATTCTGC TGTTCGTCCT GTCGTCGTGG CTATGCGGCG TCGCGCCCAA TCTCACTTTT CTTCTCGCGG CGCGAATCCT TCAGGGAGCC GTCGCGGGTC CGATGATTCC GCTCTCGCAA GCAATTCTCC TGGGGTCCTA TCCCAAGGAG AAAAGCGGTC AGGCACTCGC GTTGTGGGCG ATGACCGCTA CCGTGGGACC AATAGCCGGC CCGGCTTTGG GGGGATGGAT GACTGACAGC TATTCCTGGT CATGGATCTT CTACATCAAC ATCCCCGTTG GGCTGTTTGC TGCCGCAGTC ACCTGGGCGA TCTATCGTAG CCGCGAGACA ACAACCCGTA TTCTCCCGAT CGACGCCATA GGACTGGCAG CGCTTGTCAC CTGGGTGGCA GCCCTTCAGA TCATGCTCGA CAAAGGCAAG GATCTCGACT GGTTCGCTTC GCCGGTGATC ATCAGCCTGG CCATTGTCGC CCTACTCGGC TTCCTGTTCT TCGTGATCTG GGAACTGACC GAAGCCAATC CGATCGTCGA TTTGAGGCTG TTTAAAGGAC GCAACTTCCT GGCCGGAACC ATCGCAATAT CGGTGGCCTA CGCGGTCTTC TTCGCGAATC TGGTCGTGCT GCCGCAATGG ATGCAGCAGT ACCTCGCCTA TCCAGCCGTC AATGCCGGCC TTGTCACGGC GCCATTGGGC ATCTTCGCGG TGGTGCTTGC GCCGGTCCTT GGCAAACTGA TGCCAAAAGC CGAGTTGCGC ATTCTCTCCA CCCTTTCGTT TCTCGGCTTT GCCGCGGTGT TCTTCATGCG CTCCCACTAC ACGACGGGAG TCGACACATT CACGTTGGTT CTCCCAACGC TGCTGCAGGG CATTCCAACA GCATTGTTCT TTGTTCCGTT GACGGCCATC ATTCTTTCCG GTCTCCCACC AGACAAGATC CCCGCCGCGG CCGGACTGTC GAACTTTGTC CGCGTGTTCT GCGGCGCTGT GGGAACGTCA CTTGCGACCA CTGTGTGGAA CGACCGCGCC ATACTGCATC ACGCACAACT AGTCGAAAAG GCGAACCCTG GTAATCCGAA CTACAGTGCC GCGCTGGAGG CCATCCAGTC CGTAATGCAC CTATCCCCTG GCCAGGCGAC CGCCTACTTT GAAAGACAGC TCAATACCCA GGCGATCATG CTGGGCCTGA ACGACATCTT CTGGATATCA GCCGTCATCT TCGTCGCCAT TGTTCCACTG ATCTGGCTGA CCAAGCCAGC GCGTGGCGCG GCGTCCGGTG CGGCATCCGC TGCCCACTAG
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Protein sequence | MPNPMTSELP PPLTGGKLAM GSLAVALATF MNVLDSSIAN VAIPTISGNL GVSVDEGTWV ITLFAAANAV AIPLTGWLTQ RVGQIRLFVG SILLFVLSSW LCGVAPNLTF LLAARILQGA VAGPMIPLSQ AILLGSYPKE KSGQALALWA MTATVGPIAG PALGGWMTDS YSWSWIFYIN IPVGLFAAAV TWAIYRSRET TTRILPIDAI GLAALVTWVA ALQIMLDKGK DLDWFASPVI ISLAIVALLG FLFFVIWELT EANPIVDLRL FKGRNFLAGT IAISVAYAVF FANLVVLPQW MQQYLAYPAV NAGLVTAPLG IFAVVLAPVL GKLMPKAELR ILSTLSFLGF AAVFFMRSHY TTGVDTFTLV LPTLLQGIPT ALFFVPLTAI ILSGLPPDKI PAAAGLSNFV RVFCGAVGTS LATTVWNDRA ILHHAQLVEK ANPGNPNYSA ALEAIQSVMH LSPGQATAYF ERQLNTQAIM LGLNDIFWIS AVIFVAIVPL IWLTKPARGA ASGAASAAH
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