Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rmet_4228 |
Symbol | tnpA |
ID | 4041086 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Cupriavidus metallidurans CH34 |
Kingdom | Bacteria |
Replicon accession | NC_007974 |
Strand | - |
Start bp | 813319 |
End bp | 814419 |
Gene Length | 1101 bp |
Protein Length | 366 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 637979651 |
Product | transposase ISRme1 |
Protein accession | YP_586364 |
Protein GI | 94313155 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG3666] Transposase and inactivated derivatives |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.00917968 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGCGGCG CTGACACCTT CACCGAAAGT TTGTTCACCA TGCGGCGGCT GGAAGATTTC GTGCCGAAGT CCCACCCCCT GCGCGCGATC CGCACCATGG CGAACCAGGC GCTGGCGAAG ATGGATCGGC TGTTCGCGCA AATGTACGAG GCCGATATCA AGGGTGGCCG GCCCAGCATC GCGCCGGAGA AGTTGCTGCG GGCCATGCTG CTGCAGGTGC TCTACAGCGT CCGGTCGGAG CGCCAGCTCA TGGAACAGAC GCACTACAAC TTGCTGTTTC GCTGGTTCAT TGGCCTGGCG ATGGATGATG TGGTCTGGGT GCCCAGCGTC TTCAGCAAGA ACCGGGAACG GCTGATCAAG CACGATGCTG TGATCGACTT CTTCAACGAA GTGCTGGCCA TCGCGCAGAA GAAGGACTGG CTGTCGGGCG AGCACTTCAG CGTCGACGGC ACGTTGATTA AGGCGTGGGC TGGCCACAAG AGCTTTGTAC GCAAGGATGG CGACGACCAA GACGATAACG ACGGTGCTGA CTTCAAGGGT GAAAAGCGCA GCAACGAGAC GCACGAGTCC AAAACCGATC CCGATGCCAA GCTGTACCGC AAGGGCAAAA CCGCCAGTGA ACTGCGTTAC ATGGGTCATA CCCTGAGCGA CAACCGCCAC GGCCTGGTGG TGAGCGCCAT GGTGACCAAT GCGGACGGAC ACGCCGAGCG CGAGGCCGCG AAGGTCATGC TCAACGATGC CAGGCAGGTG ATTGAGGACC TGAATGTGGA AGTCACCGTG GGTGCGGACA AGGGCTACGA CGCGCACGAG TTCATTCAAG CCTGCCTGGA GTTGAAGGTG ACGCCGCACG TCGCACAAAA CACCTCTGGC CGCCGCTCGG CCGTTCCCGA CGCCATTGCA GGCACCAAGG GTTATGCCAT CTCACAGCAG AAGCGCAAGC TGATTGAACA AGGCTTTGGA TGGGCCAAGA CCGTTGGGCG CATGCGCCAG GTGATGGTGC GCGGACTAAA GAAGGTCGAT CAAATGTTTG TGCTGAGCAT GGCCGCCTAC AACCTCGTGC GCATGCGTTC GCTGGGACAA ATCCGTCCGC AGTTGCAGTA A
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Protein sequence | MRGADTFTES LFTMRRLEDF VPKSHPLRAI RTMANQALAK MDRLFAQMYE ADIKGGRPSI APEKLLRAML LQVLYSVRSE RQLMEQTHYN LLFRWFIGLA MDDVVWVPSV FSKNRERLIK HDAVIDFFNE VLAIAQKKDW LSGEHFSVDG TLIKAWAGHK SFVRKDGDDQ DDNDGADFKG EKRSNETHES KTDPDAKLYR KGKTASELRY MGHTLSDNRH GLVVSAMVTN ADGHAEREAA KVMLNDARQV IEDLNVEVTV GADKGYDAHE FIQACLELKV TPHVAQNTSG RRSAVPDAIA GTKGYAISQQ KRKLIEQGFG WAKTVGRMRQ VMVRGLKKVD QMFVLSMAAY NLVRMRSLGQ IRPQLQ
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