| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_4226 |
|---|
| Symbol | |
|---|
| ID | 4041084 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cupriavidus metallidurans CH34 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007974 |
|---|
| Strand | + |
|---|
| Start bp | 811441 |
|---|
| End bp | 812376 |
|---|
| Gene Length | 936 bp |
|---|
| Protein Length | 311 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 637979649 |
|---|
| Product | LysR family transcriptional regulator |
|---|
| Protein accession | YP_586362 |
|---|
| Protein GI | 94313153 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.0289175 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTACCATC GAACTGTCCA TCCAATTGCC TGCGCCATGA ACTTCACACT CAGGGAGTTC
CGAGTATTCC GCGTCGTGTA CGAACTCCGC AGTTTCAGCG GAGCTTCCCA GACCATTCAC
ATGACGCAGT CGGCGGTGAG CAAGGTGTGC CAGGAGATGG AGGCCAAGGT CGGGCAGCGG
CTCTTCGAAC GGTCGACTCG CAAGGTGACA CCAACCCAGT TGGCGCACCA GTTGTATGGC
CATGTATGTG AAGTGCTCGG GACCATGGAT GCCGCCGAGC GCAGTATGCA GAGCCTTCTG
AACCTAGAAG CTGGCGAAGT CAGCGTCGCA TCGTCGCCAA TGATGTGCGT GGGATTGTTG
CGGGGGGCGG TTTCGGCGTT CCACGAAGCC CATCCGGCGA TCCGGATCGG CATGCATGAG
TTGTCGACGG ACGAGACGAT CGAGTACGTG GTTAATGGAA AGGCCGACTT CGGACTGGTT
TCGATGGAAG AAGCTCATCC CAAGCTCTCG ATCGAGCACC TGTACAACGA ATCCATGTTC
GTGATCTGTG CCGGCGACCA CGAACTGGCA CGCAAGCGCA AGGTTAGCTG GGAGTTGCTT
GCCGACTATC CACAGATCTC CTTGCATTCA ACGTTCAGCA CGCGGCGGAC GATCGATCGC
GTTTTTGCGT CGAGACATCT GGCGTACTCA ACTTCCGTTG AAGTCGGGAC GGTGCTGTCG
GCAATTAGTT TTGCGAAGGC GCGGCTCGGG GTTACGGTCT TGCCCGGCTA CGTTCGGGAG
TTCGTCTCGG AACTGGGCCT GGTAGCGAGG GCATTGCCCT GCGAGGGAGT CGAACACCCC
ATCTCGCTCA TTACACGTTG GAATGCGCGG CTTTCGACGC CAGCAGAATG CCTGCTTGAC
AGCGTCAGGA AGCGACTGGC CGCCGCACGA GCCTAG
|
|---|
| Protein sequence | MYHRTVHPIA CAMNFTLREF RVFRVVYELR SFSGASQTIH MTQSAVSKVC QEMEAKVGQR
LFERSTRKVT PTQLAHQLYG HVCEVLGTMD AAERSMQSLL NLEAGEVSVA SSPMMCVGLL
RGAVSAFHEA HPAIRIGMHE LSTDETIEYV VNGKADFGLV SMEEAHPKLS IEHLYNESMF
VICAGDHELA RKRKVSWELL ADYPQISLHS TFSTRRTIDR VFASRHLAYS TSVEVGTVLS
AISFAKARLG VTVLPGYVRE FVSELGLVAR ALPCEGVEHP ISLITRWNAR LSTPAECLLD
SVRKRLAAAR A
|
|---|
| |