| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_4170 |
|---|
| Symbol | |
|---|
| ID | 4041028 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cupriavidus metallidurans CH34 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007974 |
|---|
| Strand | + |
|---|
| Start bp | 756509 |
|---|
| End bp | 757585 |
|---|
| Gene Length | 1077 bp |
|---|
| Protein Length | 358 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 637979593 |
|---|
| Product | NAD-dependent epimerase/dehydratase |
|---|
| Protein accession | YP_586306 |
|---|
| Protein GI | 94313097 |
|---|
| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0451] Nucleoside-diphosphate-sugar epimerases |
|---|
| TIGRFAM ID | [TIGR03466] hopanoid-associated sugar epimerase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.117289 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.322206 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTGCACC GCAATCCGGC TGTGGGTGGG CTTCTGCGGG GCAGAAGAGC CTGCCGCGCC
GGCAGCATTG TCAGGGGATT TGAAATTAAC AATTGCATTC TTGTTACAGG TGCGTCGGGA
TTCCTGGGCT CCTCTGTGAT GCGACAGGCA CTCGACCGTG GCTTCCAGGT GCGCGTGCTT
GTGCGCTCGA CCAGCCCGCG CGCCAATCTG GCCGGCTTGC CCGTGGAGAT TGTCGAAGGT
GACATGCGCG ATGCCGCGTC GATGACCCGC GCCATGGCCG GCGTGCGCTA CCTGTTCCAT
GTGGCAGCCG ATTACCGGCT CTGGGCGCCT GATCCGGAAG AAATCGTGCG TTCGAACGTC
GAGGGCACGG TCACGGTCAT GAACGCCGCG CGCGCAGCTG GCGTGGAGCG TGTCATCTAT
ACGAGCAGCG TGGCCACCCT GCGTGTGGCG GGCGCCACGG CGCCGGTCGA CGAGACGGCG
GCAATGGCCG GCCATGAGGC GATTGGCGCC TACAAGCGCA GCAAGGTGCT GGCCGAGCGC
GAGGTGGAGC GTCTGGTGGC GGAAGGCCTG CCGGCGGTCA TCGTGAATCC CTCCACGCCG
ATTGGCCCGC GCGACGTGCG TCCGACTCCG ACCGGCCGGA TCATTGTCGA GGCGGCCACC
GGCAAGATCC CGGCCTTCGT CGATACCGGC CTGAATCTGG TCCACGTGGA CGACGTGGCG
AACGGTCATT TCCTGGCACT GGACAAAGGG CGCATCGGTG AGCGCTATAT CCTGGGCGGC
CAGGATGTGC TGCTGCGGCA GATGCTGGCT GACATCGCGG ACATGGCCGG CCGCAAGGCG
CCAACCATCG AGTTGCCGCG CTGGCCGCTC TATCCGGTCG CCCGCGTGGC CGAGACCATC
GCGCGCTTCA CCGGCAAGGA GCCGTTCGTG ACCGTGGACG GGCTGAAGAT GTCGCAATAT
CGGATGTTCT TCACTTCCGC CAAGGCCCAG CGTGAGCTTG GATACGCGCC GCGCCCCTAT
CAGGAAGGGC TGCGCGACGC GCTCACGTGG TTCCGGGAAG CCGGCTATCT GAAGTAG
|
|---|
| Protein sequence | MLHRNPAVGG LLRGRRACRA GSIVRGFEIN NCILVTGASG FLGSSVMRQA LDRGFQVRVL
VRSTSPRANL AGLPVEIVEG DMRDAASMTR AMAGVRYLFH VAADYRLWAP DPEEIVRSNV
EGTVTVMNAA RAAGVERVIY TSSVATLRVA GATAPVDETA AMAGHEAIGA YKRSKVLAER
EVERLVAEGL PAVIVNPSTP IGPRDVRPTP TGRIIVEAAT GKIPAFVDTG LNLVHVDDVA
NGHFLALDKG RIGERYILGG QDVLLRQMLA DIADMAGRKA PTIELPRWPL YPVARVAETI
ARFTGKEPFV TVDGLKMSQY RMFFTSAKAQ RELGYAPRPY QEGLRDALTW FREAGYLK
|
|---|
| |