| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_4130 |
|---|
| Symbol | dnaE2 |
|---|
| ID | 4040988 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cupriavidus metallidurans CH34 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007974 |
|---|
| Strand | + |
|---|
| Start bp | 701717 |
|---|
| End bp | 705178 |
|---|
| Gene Length | 3462 bp |
|---|
| Protein Length | 1153 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 637979553 |
|---|
| Product | error-prone DNA polymerase |
|---|
| Protein accession | YP_586266 |
|---|
| Protein GI | 94313057 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0587] DNA polymerase III, alpha subunit |
|---|
| TIGRFAM ID | [TIGR00594] DNA-directed DNA polymerase III (polc) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.975833 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCTGTCCG GCCTGTCTTC GTTGTTGCCG TCGCTGCCCG ACTATGTCGA GCTGCACTGC
ATCTCCAACT TCACATTCCT GAACGGTGCC TCGCATCCGC AGGAACTGAT TTCGCGCGCG
TTCCAACTGG GCTACAGCGG GCTGGCGCTG ACCGATGAAT GCTCGGTGGC CGGCACCGCC
CGCGCGCATC ATGCGATCAA GGTGCTGCGC GAGGATATGT GGGAGGCGGT AACACGCAGC
GCCCGGCGAC TGGCCGCGGG GCAGACGGCG GGCGATGTCG ACGAGATAGA GGAGCTATCG
GCATTCGACC TCGACACCGG CGGCGAAGAG AGCGATGCAG GAGGTGTGGA TGATGCGGAG
GATACGGAGG ATGAGGATGC GCTGTCGCCG GACGATTTCG ACGATGACCC CGATGCCGCC
GCGCGCCGTC ATCGCGTGCT CGAAGCCCGC GCCGCCGCTG CCGATGCGTT CAACCTGATC
ATCGGCAGCC GCTTCACGTT GACAGCCGCG CCCGAAGACA CCATGCCGCC ACCGCGCCTG
GTGCTGCTGG CGCGCAATCG CATCGGATTT GGCGACCTGT GCGAGTTCAT CACGCTGGGC
CGCACCCGCG CGGAGAAGGG CAGCTATCTG CTGTATCCAT CCGATCTTGC CGATCCGCAG
CCGGAGCAGG CGCATCTGCG CGGCATGCCG GATTGCCTGG TGGTCCTGCT GCCCGATTAC
TGCGCCGATC TCGACGTCCT GCGCGCGCAG GCACGCTGGT GCCGCGCAAC CTTCGGCGAC
CGCGCTTGGA TGGCGATGGA ACTGCTGCAG GGCCATGCCG AAGCCATGCA TCGCGCGCGT
TTGCAGCAGG TGTCGGCGGA AACCGGCGTG CCGCTGGTGG CGGCCGGCGC GGTCAACATG
CATGTCCGCT CGCGCAAGCC GCTGGCCGAT GTGCTGACCG CGATCCGCAT CGGCCAGCCT
TTGTCTGCGT GTGGACGGGC CCTCGCGCCA AATGCCGAGG CGCATCTGCG CATGCGCCAG
GTGCTGTCGC GGCTCTATCC GCGCGAAGCG CTGGCGCAGA CGCTGAAGCT GGCGGACCAA
TGCCGCTTCT CGCTCGACAT GCTGCGCTAC GAGTATCCCG AGGAACTCGT GCCCGACGGC
GAAACGCCGA TCACCTATCT GCGCAAGGAG GTGGAGCGCG GCATCACCGA ACGTTTTCCA
CATGGCATGG CGCCGGAATG GAAGAAGCAA CTCAAGGAAG AACTCGAACT GATCGAGGAG
AAGCACTACG AGCCGTTCTT CCTGACCGTG CACGATATCG TCCGCTTCGC GCGCCAGGAG
GGCATCCTGT GCCAGGGGCG CGGATCGGCG GCCAACTCGC TAGTCTGCTA CTGCCTGCAT
ATCACCGAGG TCAGCCCGGA ACAAGCCAAC CTGCTGTTCG GCCGGTTCCT GTCGCGCGAG
CGTGACGAGC CGCCCGATAT CGATGTCGAT TTCGAGCACC AGCGGCGCGA GGAGGTGATC
CAGTACATCT ATGGAAAATA CGGCCGCCAT CGCGCCGCGC TGGCCGCGTC GCTGATCACG
TACCGCTCGC GCAGCGCGTT GCGCGACGTG GGGCGCGCGC TCGGCATCGA CCCGGGTGTG
GTGGAACAGG TGGTCAAGGG GCAGGCCTGG TGGGATGGCG GCGCGGCGTT CATTGACCGC
ATTTCGCGCT ACGGGCTCGA TCCCGATTCC ATCACCGTGC GGCAATGGGC CAGCCTGACG
GAGCAGTTGC GCGGCTTTCC CCGTCACCTG TCGCAACACG TGGGCGGCTT CGTGATCGCG
CGGGACAAGC TGTCGCGGCT CGTGCCGATC GAGAATGCGG CGATGGAAAA CCGCAGTGTG
ATCCAGTGGG ACAAGGACGA CCTGGAATCG CTGGGGTTGT TGAAGGTCGA TGTGCTCGCG
CTGGGCATGC TGACCGCGAT CCGCCGTGCG CTGACGATGA TCCCGAATCC GGACCCGGAG
CGCGCCGGAC TGCCCACGCG CATGGAGGAT CTGCCCGATG GCGACGTCAA GACCTACGAC
ATGATCTGCA AGGCCGATAC GATCGGTGTG TTCCAGATCG AATCGCGCGC GCAGCAATCG
ATGCTGCCGC GGCTGCAACC GCGGGAGTAT TACGACCTCG TGGTGGAAGT GGCCATCGTG
CGGCCGGGGC CGATCCAGGG CGGCATGGTG CATCCGTATC TGAAGCGGCG CGAAGCGTTT
CGCCTCACCC GCAAGCTGCC GACCTACTTC GACGACGTGA TCCGCCGCGT GCTGGGCCGC
ACCTTGGGCG TGCCGATCTT CCAGGAACAG GTCATGCAGC TTGCGATCGA GGCGGCCGGG
TTTACGCCCG GGCAGGCGGA TCAGTTACGG CGCTCGATGG CGGCCTGGCG TCGTCGTGGC
GATCTCAAGA AGCATCAGGA CGCGCTGGTA CGGGCGCTGA CCGGGCGCGG CTATCCCGAA
TCGTTCGCGC TGGCCATCTG CAAGCAGATC GAGGGGTTTG GGGAATATGG CTTCCCGGAA
AGCCATGCGG CCAGCTTCGC CAAGCTCGTA TACGTCAGCG CATGGATCAA GTGTCATTAC
CCCGAGGCGT TCCTGTGCGC ACTGCTCAAC AGTCAGCCGA TGGGCTTCTA CTCGCCGTCG
CAACTGGTGC AGGACGCGCG CCGGCATGGC GTGACGTCGC AGCCCGTGGA CGTGACGATC
AGCAACTGGG AGAGCACGCT GGAGCCGCGC CGGGAAGGGC AGAACTTCCG CGACGTGCGG
CTGGGCATGA ATCGCGTGAA GGGGATGCGC GAGGCTGCCG CGCTGCGGAT CGAGGCGGCG
CGTGTGGCGC GGCCATTCGA CAGCGTCGAG GACCTCGCGC GCCGCGCGTC ACTGGACCGG
CACGACATTG ACGCGCTGGC CGCGGCCGAT GCGCTGGTAT CCCTCGCGGG GCATCGACGC
CAGGCACGCT GGCACGCGCG TGGCGCGGCG GTGCAGACCG CGCATCGCGA TCTGCTGCAC
GATGCGCCAC CGCAGGAGCA CGCACTGCAA CTTCCCGAGC CGAAACTCGG CGAGGACGTG
GCCGCCGACT ACGCCAGCCT GGGGCTATCG CTGAAGTGCC ATCCGCTGAC ACTACTGCGC
CACAGACTGC GCGCGCTCAA GTTCGCGACG GCACGCCAAC TCGCGAACTG CGCCAACGGC
CGCCGCGTGC GTGCCTGCGG CATCGTGACC GTGCGCCAAC GGCCATCGAC GGCCAGCGGC
ACGATCTTCA CCTCGATCGA GGACGAGACC GGCGCCGTCA ACGTCATCAT CTGGCCAGAC
CTGGTGGAGC GGCAGCGCAA GGAGGTTCTG GGGGCGACGC TGCTCGGCGT GATTGGCACC
TGGCAACGAC AGGGCGAGGT GCGCCATCTG GTTGCGGACG AACTGGTGGA TCTGAGTCCG
TTGCTGGGGA GGCTGATGGT GGGGAGTCGG GATTTTCATT GA
|
|---|
| Protein sequence | MLSGLSSLLP SLPDYVELHC ISNFTFLNGA SHPQELISRA FQLGYSGLAL TDECSVAGTA
RAHHAIKVLR EDMWEAVTRS ARRLAAGQTA GDVDEIEELS AFDLDTGGEE SDAGGVDDAE
DTEDEDALSP DDFDDDPDAA ARRHRVLEAR AAAADAFNLI IGSRFTLTAA PEDTMPPPRL
VLLARNRIGF GDLCEFITLG RTRAEKGSYL LYPSDLADPQ PEQAHLRGMP DCLVVLLPDY
CADLDVLRAQ ARWCRATFGD RAWMAMELLQ GHAEAMHRAR LQQVSAETGV PLVAAGAVNM
HVRSRKPLAD VLTAIRIGQP LSACGRALAP NAEAHLRMRQ VLSRLYPREA LAQTLKLADQ
CRFSLDMLRY EYPEELVPDG ETPITYLRKE VERGITERFP HGMAPEWKKQ LKEELELIEE
KHYEPFFLTV HDIVRFARQE GILCQGRGSA ANSLVCYCLH ITEVSPEQAN LLFGRFLSRE
RDEPPDIDVD FEHQRREEVI QYIYGKYGRH RAALAASLIT YRSRSALRDV GRALGIDPGV
VEQVVKGQAW WDGGAAFIDR ISRYGLDPDS ITVRQWASLT EQLRGFPRHL SQHVGGFVIA
RDKLSRLVPI ENAAMENRSV IQWDKDDLES LGLLKVDVLA LGMLTAIRRA LTMIPNPDPE
RAGLPTRMED LPDGDVKTYD MICKADTIGV FQIESRAQQS MLPRLQPREY YDLVVEVAIV
RPGPIQGGMV HPYLKRREAF RLTRKLPTYF DDVIRRVLGR TLGVPIFQEQ VMQLAIEAAG
FTPGQADQLR RSMAAWRRRG DLKKHQDALV RALTGRGYPE SFALAICKQI EGFGEYGFPE
SHAASFAKLV YVSAWIKCHY PEAFLCALLN SQPMGFYSPS QLVQDARRHG VTSQPVDVTI
SNWESTLEPR REGQNFRDVR LGMNRVKGMR EAAALRIEAA RVARPFDSVE DLARRASLDR
HDIDALAAAD ALVSLAGHRR QARWHARGAA VQTAHRDLLH DAPPQEHALQ LPEPKLGEDV
AADYASLGLS LKCHPLTLLR HRLRALKFAT ARQLANCANG RRVRACGIVT VRQRPSTASG
TIFTSIEDET GAVNVIIWPD LVERQRKEVL GATLLGVIGT WQRQGEVRHL VADELVDLSP
LLGRLMVGSR DFH
|
|---|
| |