| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_4059 |
|---|
| Symbol | ccmB |
|---|
| ID | 4040917 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cupriavidus metallidurans CH34 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007974 |
|---|
| Strand | - |
|---|
| Start bp | 625441 |
|---|
| End bp | 626109 |
|---|
| Gene Length | 669 bp |
|---|
| Protein Length | 222 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 637979483 |
|---|
| Product | cytochrome c heme exporter protein |
|---|
| Protein accession | YP_586196 |
|---|
| Protein GI | 94312987 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG2386] ABC-type transport system involved in cytochrome c biogenesis, permease component |
|---|
| TIGRFAM ID | [TIGR01190] heme exporter protein CcmB |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 0.570531 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCCAGG CCATCGGCAC GATCATCGCG CACGACCTGT CGATCGCATG GCGGCGGCGC
ACCGGGCTGC TTTCCAGCCT GGTCTTCTTC GTCATCGCCA CGAGCCTCTT TCCGCTGGCC
ATCGGCCCGG ACCCGCAGCA ATTGCGCGCG CTGGCGCCGG GCATCCTGTG GGTGTCGGCA
CTGCTCGCGT CGATGCTGTC GCTGTCGCGG CTGTTCACAC AGGAACACGA GGATGGCAGT
CTCGACCAGC TCCTGCTGTC ACCCCACCCG CTGGCCTTGC TCGTGCTGGC CAAGATCGGC
GCGCACTGGC TGACCAGCGG CCTGCCGCTG CTCGTGCTGA CGCCGCTGCT GGCCCAGCAA
TACAGCCTGC CGGCCGGCTC CGCGCTGCTG CTGTCGGCCT CGCTGCTGGT GGGAACCCCT
GCACTTAGCC TGATCGGCGC CGTTGGCGCG GCATTGACGC TGGGCGTACG CGGTGGCGCC
GTGCTGTTGT GCATCCTGGT GCTGCCGCTG TCAATTCCTG TGCTGGTGTT CGGCGCCAGC
GCGGGCGCGG CGGCCGATGC CGGACTCGAC GTGATCCCGC AATTTTCGCT ACTCGGGGCC
TGCCTGGCGC TATCGCTGTT CCTGTGTCCG CTGGCCACGG CGGCAGGCTT GCGCATCGCC
ATGGAGTAA
|
|---|
| Protein sequence | MIQAIGTIIA HDLSIAWRRR TGLLSSLVFF VIATSLFPLA IGPDPQQLRA LAPGILWVSA
LLASMLSLSR LFTQEHEDGS LDQLLLSPHP LALLVLAKIG AHWLTSGLPL LVLTPLLAQQ
YSLPAGSALL LSASLLVGTP ALSLIGAVGA ALTLGVRGGA VLLCILVLPL SIPVLVFGAS
AGAAADAGLD VIPQFSLLGA CLALSLFLCP LATAAGLRIA ME
|
|---|
| |