Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rmet_3956 |
Symbol | |
ID | 4040814 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Cupriavidus metallidurans CH34 |
Kingdom | Bacteria |
Replicon accession | NC_007974 |
Strand | + |
Start bp | 515661 |
End bp | 517418 |
Gene Length | 1758 bp |
Protein Length | 585 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 637979380 |
Product | cytochrome c oxidase subunit I |
Protein accession | YP_586093 |
Protein GI | 94312884 |
COG category | [C] Energy production and conversion |
COG ID | [COG0843] Heme/copper-type cytochrome/quinol oxidases, subunit 1 |
TIGRFAM ID | [TIGR02891] cytochrome c oxidase, subunit I |
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Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 0.134754 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCCTATG CCGATGATGC CGCCCACCAC GGCCCACAGA GTTTCTGGAC GCGCTACATC TGGAGCCAGG ACCACAAGGT GATCGCCGTG CAGTACACGC TGGTCGCCAT CGTGGTCGGG TTGATCGGTG TGACGCTGTC GAATCTGATG CGGATGCAAC TGGGTTTTCC GGGGAGGTTC GATTTCATCG ACGCCAATCG CTATTACCAG TTCGTGACGA TGCACGGGAT GATCATGGTG ATCTACCTGC TGACGGCACT GTTTCTTGGC GGTTTCGGCA ATTACCTGAT CCCGCTGATG GTTGGCGCGC GCGACATGGT ATTCCCATTC CTGAACATGC TCAGCTTCTG GGTCTACTTC CTGTCGGTGC TCGTGCTGCT CGCCAGCTTC TTCGTGCCGG GCGGACCCAC CGGCGCGGGC TGGACGCTCT ATCCACCGCA GGCAATCCTG CCCGGCACGC CAGGGCATGA CTGGGGCATC ATCCTGATGC TGGTGTCGCT GCTGATCTTC ATCGTGGCGG CTACCATGGG TGGCCTGAAT TACGTGACCA CGGTGCTGCA GGCGCGTACC GAGGGCATGA CGATGCTGCG GATGCCGCTG GCCGTGTGGG GTATCTTCAT GGCGACGATT CTCGCACTGC TGGCGTTCCC GGCGCTGTTC GTCTCCGGTG TGATGATGCT GCTCGACAAG ACGCTCAGTA CCAGCTTCTT CATGCCCGCA GTCGTCTCGA TGGGGCAGCA GCTCAACTAC AAGGGCGGCA GCCCTCTGCT GTTCCAGCAC CTGTTCTGGT TCTTCGGTCA TCCCGAGGTT TATATCGTCG CGCTGCCCGC GTTCGGGATC GTCTCCGATC TGATCAGCGT GCATTCGCGC AAGAGCATCT TCGGCTATCG CACGATGGTG TGGGCGATTC TGGCCATCGG TGTGCTGTCG GTGGTGGTGT GGGCGCACCA CATGTTCGTG AGCGGCATGA ATCCGTACTT CGGCTTCTTC TTCGCCACCA CGACGCTGAT CATCGCGGTA CCCACCGCCA TCAAGGTCTA CAACTGGGTG ATCACGCTGT GGCAGGGCGA CATCCATTTC TCGGTGCCGA TGCTGTTCGC CATCGCCTTC ATCAGCACGT TCGTGATTGG CGGCCTGACG GGCCTGTTCC TCGGCAATGT CAGCGTGGAC ATTCCGTTGT CGAACACCTA CTTCGTCGTG GCGCACTTTC ATATGGTGAT GGGCGTCTCG CCGATCCTGG TCGTCTTCGG CGGGATCTAC CACTGGTATC CGAAAGTCAC CGGACGCATG CTCAACGACA CGCTTGGCCG CATTCATTTT TGGATCACGT TCGTCGGCAC CTACGCCATC TTCTTTCCGA TGCACTACCT CGGTATTCTG GGGATGCCGC GGCGCTACTA CGCGTGGCAG GGCTATGACT TCATACCCGA GTCCGCGCAC ACCCTGAACA TGTACATCTC GATCGCAGCG TTCATCGTCG CGGCGGCGCA GTTGCTTTTC ATCTTCAACC TCGCGTGGAG CGTGCGGCGT GGACAGCCTG CAGGCGCCAA CCCGTGGCGT GCCGCCTCGC TGGAGTGGCA GACGCCGCAG ACGCCGCCGG CGCACGGCAA CTGGGGTGCG CATCTTCCCG TGGTCTATCG CTGGGCTTAC GCGTACAGCG TGCCGGGTGC GAAGGAGGAC TTCATTGCGC AGAATGCGCC GCCAGACGCA GGTGGGAGCG AACCCGAGCC ACACGCGAGA AGGGGGGCCG TGGCATGA
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Protein sequence | MAYADDAAHH GPQSFWTRYI WSQDHKVIAV QYTLVAIVVG LIGVTLSNLM RMQLGFPGRF DFIDANRYYQ FVTMHGMIMV IYLLTALFLG GFGNYLIPLM VGARDMVFPF LNMLSFWVYF LSVLVLLASF FVPGGPTGAG WTLYPPQAIL PGTPGHDWGI ILMLVSLLIF IVAATMGGLN YVTTVLQART EGMTMLRMPL AVWGIFMATI LALLAFPALF VSGVMMLLDK TLSTSFFMPA VVSMGQQLNY KGGSPLLFQH LFWFFGHPEV YIVALPAFGI VSDLISVHSR KSIFGYRTMV WAILAIGVLS VVVWAHHMFV SGMNPYFGFF FATTTLIIAV PTAIKVYNWV ITLWQGDIHF SVPMLFAIAF ISTFVIGGLT GLFLGNVSVD IPLSNTYFVV AHFHMVMGVS PILVVFGGIY HWYPKVTGRM LNDTLGRIHF WITFVGTYAI FFPMHYLGIL GMPRRYYAWQ GYDFIPESAH TLNMYISIAA FIVAAAQLLF IFNLAWSVRR GQPAGANPWR AASLEWQTPQ TPPAHGNWGA HLPVVYRWAY AYSVPGAKED FIAQNAPPDA GGSEPEPHAR RGAVA
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