Gene Rmet_3956 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRmet_3956 
Symbol 
ID4040814 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCupriavidus metallidurans CH34 
KingdomBacteria 
Replicon accessionNC_007974 
Strand
Start bp515661 
End bp517418 
Gene Length1758 bp 
Protein Length585 aa 
Translation table11 
GC content61% 
IMG OID637979380 
Productcytochrome c oxidase subunit I 
Protein accessionYP_586093 
Protein GI94312884 
COG category[C] Energy production and conversion 
COG ID[COG0843] Heme/copper-type cytochrome/quinol oxidases, subunit 1 
TIGRFAM ID[TIGR02891] cytochrome c oxidase, subunit I 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value0.134754 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCCTATG CCGATGATGC CGCCCACCAC GGCCCACAGA GTTTCTGGAC GCGCTACATC 
TGGAGCCAGG ACCACAAGGT GATCGCCGTG CAGTACACGC TGGTCGCCAT CGTGGTCGGG
TTGATCGGTG TGACGCTGTC GAATCTGATG CGGATGCAAC TGGGTTTTCC GGGGAGGTTC
GATTTCATCG ACGCCAATCG CTATTACCAG TTCGTGACGA TGCACGGGAT GATCATGGTG
ATCTACCTGC TGACGGCACT GTTTCTTGGC GGTTTCGGCA ATTACCTGAT CCCGCTGATG
GTTGGCGCGC GCGACATGGT ATTCCCATTC CTGAACATGC TCAGCTTCTG GGTCTACTTC
CTGTCGGTGC TCGTGCTGCT CGCCAGCTTC TTCGTGCCGG GCGGACCCAC CGGCGCGGGC
TGGACGCTCT ATCCACCGCA GGCAATCCTG CCCGGCACGC CAGGGCATGA CTGGGGCATC
ATCCTGATGC TGGTGTCGCT GCTGATCTTC ATCGTGGCGG CTACCATGGG TGGCCTGAAT
TACGTGACCA CGGTGCTGCA GGCGCGTACC GAGGGCATGA CGATGCTGCG GATGCCGCTG
GCCGTGTGGG GTATCTTCAT GGCGACGATT CTCGCACTGC TGGCGTTCCC GGCGCTGTTC
GTCTCCGGTG TGATGATGCT GCTCGACAAG ACGCTCAGTA CCAGCTTCTT CATGCCCGCA
GTCGTCTCGA TGGGGCAGCA GCTCAACTAC AAGGGCGGCA GCCCTCTGCT GTTCCAGCAC
CTGTTCTGGT TCTTCGGTCA TCCCGAGGTT TATATCGTCG CGCTGCCCGC GTTCGGGATC
GTCTCCGATC TGATCAGCGT GCATTCGCGC AAGAGCATCT TCGGCTATCG CACGATGGTG
TGGGCGATTC TGGCCATCGG TGTGCTGTCG GTGGTGGTGT GGGCGCACCA CATGTTCGTG
AGCGGCATGA ATCCGTACTT CGGCTTCTTC TTCGCCACCA CGACGCTGAT CATCGCGGTA
CCCACCGCCA TCAAGGTCTA CAACTGGGTG ATCACGCTGT GGCAGGGCGA CATCCATTTC
TCGGTGCCGA TGCTGTTCGC CATCGCCTTC ATCAGCACGT TCGTGATTGG CGGCCTGACG
GGCCTGTTCC TCGGCAATGT CAGCGTGGAC ATTCCGTTGT CGAACACCTA CTTCGTCGTG
GCGCACTTTC ATATGGTGAT GGGCGTCTCG CCGATCCTGG TCGTCTTCGG CGGGATCTAC
CACTGGTATC CGAAAGTCAC CGGACGCATG CTCAACGACA CGCTTGGCCG CATTCATTTT
TGGATCACGT TCGTCGGCAC CTACGCCATC TTCTTTCCGA TGCACTACCT CGGTATTCTG
GGGATGCCGC GGCGCTACTA CGCGTGGCAG GGCTATGACT TCATACCCGA GTCCGCGCAC
ACCCTGAACA TGTACATCTC GATCGCAGCG TTCATCGTCG CGGCGGCGCA GTTGCTTTTC
ATCTTCAACC TCGCGTGGAG CGTGCGGCGT GGACAGCCTG CAGGCGCCAA CCCGTGGCGT
GCCGCCTCGC TGGAGTGGCA GACGCCGCAG ACGCCGCCGG CGCACGGCAA CTGGGGTGCG
CATCTTCCCG TGGTCTATCG CTGGGCTTAC GCGTACAGCG TGCCGGGTGC GAAGGAGGAC
TTCATTGCGC AGAATGCGCC GCCAGACGCA GGTGGGAGCG AACCCGAGCC ACACGCGAGA
AGGGGGGCCG TGGCATGA
 
Protein sequence
MAYADDAAHH GPQSFWTRYI WSQDHKVIAV QYTLVAIVVG LIGVTLSNLM RMQLGFPGRF 
DFIDANRYYQ FVTMHGMIMV IYLLTALFLG GFGNYLIPLM VGARDMVFPF LNMLSFWVYF
LSVLVLLASF FVPGGPTGAG WTLYPPQAIL PGTPGHDWGI ILMLVSLLIF IVAATMGGLN
YVTTVLQART EGMTMLRMPL AVWGIFMATI LALLAFPALF VSGVMMLLDK TLSTSFFMPA
VVSMGQQLNY KGGSPLLFQH LFWFFGHPEV YIVALPAFGI VSDLISVHSR KSIFGYRTMV
WAILAIGVLS VVVWAHHMFV SGMNPYFGFF FATTTLIIAV PTAIKVYNWV ITLWQGDIHF
SVPMLFAIAF ISTFVIGGLT GLFLGNVSVD IPLSNTYFVV AHFHMVMGVS PILVVFGGIY
HWYPKVTGRM LNDTLGRIHF WITFVGTYAI FFPMHYLGIL GMPRRYYAWQ GYDFIPESAH
TLNMYISIAA FIVAAAQLLF IFNLAWSVRR GQPAGANPWR AASLEWQTPQ TPPAHGNWGA
HLPVVYRWAY AYSVPGAKED FIAQNAPPDA GGSEPEPHAR RGAVA