| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_3924 |
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| Symbol | acrB |
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| ID | 4040782 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cupriavidus metallidurans CH34 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007974 |
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| Strand | + |
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| Start bp | 480365 |
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| End bp | 483511 |
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| Gene Length | 3147 bp |
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| Protein Length | 1048 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 637979348 |
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| Product | multidrug efflux system protein |
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| Protein accession | YP_586061 |
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| Protein GI | 94312852 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family
[TIGR01131] ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes) |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.0170856 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCTAATT TCTTTATCGA GCGGCCGATC TTTGCCTGGG TGATCGCGCT GGTCATCATG
CTGGCCGGCG TGCTCTCCAT CAGAACGCTG CCGATCAACC AGTACCCGGC GATCGCCCCG
CCGACCATCG CCATCTCCGT AACCTACCCG GGCGCTTCGG CGCAAACGGT GCAGGATACG
GTGGTGCAGG TGATCGAGCA GCAGCTGAAT GGCCTGGATC GCCTCCGCTA CATCTCGTCG
GAATCGAACT CCGACGGCAG CATGACCATC ACGGTCACGT TCGAGCAAGG CACCAACCCG
GATATCGCGC AGGTGCAGGT GCAGAACAAG CTTGCCCTAG CCACGCCACT GTTGCCGCAG
GAAGTTCAGC AGCAGGGGAT TCGCGTAACC AAGTCGGTGC GTAACTTCCT GCTGATCGTG
GGTCTGATTT CGACCGACCC CAACATGACG CGGGAGGATT TGTCGAACTA CATCGTTTCG
AACATCCAGG ATCCGCTATC GCGTACCGCA GGCGTGGGCG ACTTCCAGGT GTTCGGCTCG
CAGTATGCGA TGCGGATCTG GCTGGACCCG GCCAAGCTCA ACAGCTACCA GCTCGCGCCG
CTGGATGTGA GCAACGCGAT CAAGGCCCAG AACGTCCAGG TGGCTTCGGG TCAGCTTGGT
GGCCTGCCGG CGGTTCGCGG ACAGCAGCTT AATGCGACGG TGATTGGCAA GACGCGTCTC
CAGACCGCCG AGCAGTTTGG CGACATCCTG CTCAAGGTCA ATCCCGACGG CTCGCAGGTG
CGCCTGAAGG ACGTGGCCGA TGTTGCTCTG GGTGGCCAGG ACTACACGAT CAACGCGCAG
TACAACGGTC GCCCGGCATC GGGTATCGCG ATTCGCCTGG CATCCGGCGC CAACGCGCTG
GAGACGGTCA AGAACATCCA CAATACGCTG GCTCAGCTGG AACCGACGTT CCCGCCGGGC
ATCAAGGTGG TGTTCCCGTA TGACACGACG CCGGTGATCT CCGACTCGAT CCACGAGGTG
ATCAAGACGC TGCTCGAGGC AATCGTGCTC GTCTTCCTGG TGATGTATCT GTTCCTGCAG
AACTTCCGCG CCACGCTGAT CCCAACGATC GCGGTGCCGG TGGTGCTGCT CGGCACGTTC
GGCGTGTTGG CCGCGTTTGG CTATTCGATC AACACACTGA CGATGTTCGG CATGGTGCTG
GCCATCGGTC TGCTGGTGGA CGATGCCATC GTGGTGGTCG AGAACGTCGA GCGGGTGATG
GCCGAAGACG GGCTGGGGCC AAAGGAAGCC GCACGAAAAT CGATGGGGCA GATCCAGGGC
GCGCTGGTTG GTATCGCGCT GGTGCTGTCC GCGGTGTTCC TGCCGATGGC GTTCTTCGGG
GGCTCGACGG GTGTGATCTA TCGCCAGTTC TCGATCACGA TCGTTTCCGC GATGGTGCTG
TCTGTGCTCG TGGCGCTTGT TCTCACGCCG GCACTGTGCG CGACGATGCT CCAGCCGATC
GAGAAGGGCG ATCACGGCGA GCACAAGCAG GGCTTCTTCG GCTGGTTCAA CCGCAGCTTC
ATCCGGTCGA CGCAAAGCTA TGAGCGTGGG GTCTCCGGCA TTCTCAAGCG CCGGGCTCCG
TTCCTGCTGA TCTATCTGGC GATCGTGGTG GTGATGGGAT TCCTGTTCAC GCGCATCCCG
ACCTCGTTCC TGCCGGAAGA AGATCAGGGC GTGCTGTACG CGCAGGTGCA GACACCGGCC
GGCTCGTCGG CCGAGCGCAC GCAGGCCGTG CTTGACCAGA TGCGCAACTA CCTGCTGAAT
GACGAAGGCA AGATCGTGGA GTCGCTCTTT ACCGTGAACG GCTTCAACTT TGCCGGCCGT
GGCCAGAGTT CGGGTCTCGC GTTTATTCTG CTGAAGCCGT TCAAGGATCG CGAAGGCGAT
GCCACGAGTG TGTTCGACCT GACCAAGCGG GCGCAGGCCA AGTTCAGCAC GTTCCGCGAC
TCGCTGGCAT TTGCCTTCGC GCCGCCGGCG GTGCAGGAAC TCGGTAACGC CACGGGCTTC
GACTTCTATA TGCAGGATCA GGCCGGCCTG GGGCACGACG CGCTGATGAA CGCGCGCAAC
AAGTTCCTGT CGCTCGCAGC CAAGAACCCC GCGTTGCAGC GAGTGCGTCC GAACGGCCTC
AATGACGAGC CGCAGTACGT CCTCGAAATC GACGATGAGC GCGCGCGCGC GTTGGGGCTG
TCTCTGGCGG ACATCAACAG CACGGTGTCA ATTGCCTGGG GTTCCAGCTA CGTGAACGAC
TTCATTGACC GGGGCCGCGT CAAGCGTGTG TACCTGCAGG GTCGGCCGAA CTCGCGAATG
TCGCCAGAGG ACCTCAACAA GTGGTTCGTG CGCAACGACA AGGGTGACAT GGTGCCGTTC
TCGTCGTTTG CCACGGGCAA GTGGGGCTTT GGATCGCCGA AGCTGCAGCG CTACAACGGT
GTGCCGGCGG TGGAAATCCT CGGTGAGCCG GCGGCAGGCA AGAGCTCGGG TGAAGCCATG
GCGGCGGTAG AGGAAATCAT GAAGCAGATG CCAGCCGGCA TCTCCTATTC GTGGACGGGC
CTGTCGTACG AAGAACGGTT GTCGGGCTCC CAGGCACCAG CGCTGTACGC GTTGTCGCTG
CTGGTGGTCT TCCTCTGTCT GGCGGCGCTG TATGAAAGCT GGTCGATTCC GTTCTCGGTG
ATGCTGGTGG TGCCGCTCGG GGTGATCGGC GCGCTGCTGG CTACACTCGC ACGAGGACTG
TCGAACGACG TGTTCTTCCA GGTGGGGCTG TTGACCACGG TGGGCCTTTC CGCGAAGAAC
GCGATTCTGA TCGTGGAATT CGCCAAGGAA CTGCACGATC ACGGCAAGGG CCTCGTGGAG
GCGGCGGTGG AGGCGTGCCG AATGCGTTTA CGCCCCATCA TCATGACCTC GATGGCGTTC
ATGCTGGGCG TGTTCCCGCT GGCGGTGTCG CAAGGCGCCG GCGCGGGTAG CCAGCACGCC
ATCGGTACCG GCGTGATCGG CGGCATGATC ACCGCCACCG TGCTCGCCAT CTTCTGGGTG
CCGCTGTTCT TTGTCGTGGT CAGCGCGCTC AAGGAGCGGC GCGGCAAGTC CGATTCGTCC
TCCCTCGAGA AGGGAGCCCA AGCATGA
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| Protein sequence | MSNFFIERPI FAWVIALVIM LAGVLSIRTL PINQYPAIAP PTIAISVTYP GASAQTVQDT
VVQVIEQQLN GLDRLRYISS ESNSDGSMTI TVTFEQGTNP DIAQVQVQNK LALATPLLPQ
EVQQQGIRVT KSVRNFLLIV GLISTDPNMT REDLSNYIVS NIQDPLSRTA GVGDFQVFGS
QYAMRIWLDP AKLNSYQLAP LDVSNAIKAQ NVQVASGQLG GLPAVRGQQL NATVIGKTRL
QTAEQFGDIL LKVNPDGSQV RLKDVADVAL GGQDYTINAQ YNGRPASGIA IRLASGANAL
ETVKNIHNTL AQLEPTFPPG IKVVFPYDTT PVISDSIHEV IKTLLEAIVL VFLVMYLFLQ
NFRATLIPTI AVPVVLLGTF GVLAAFGYSI NTLTMFGMVL AIGLLVDDAI VVVENVERVM
AEDGLGPKEA ARKSMGQIQG ALVGIALVLS AVFLPMAFFG GSTGVIYRQF SITIVSAMVL
SVLVALVLTP ALCATMLQPI EKGDHGEHKQ GFFGWFNRSF IRSTQSYERG VSGILKRRAP
FLLIYLAIVV VMGFLFTRIP TSFLPEEDQG VLYAQVQTPA GSSAERTQAV LDQMRNYLLN
DEGKIVESLF TVNGFNFAGR GQSSGLAFIL LKPFKDREGD ATSVFDLTKR AQAKFSTFRD
SLAFAFAPPA VQELGNATGF DFYMQDQAGL GHDALMNARN KFLSLAAKNP ALQRVRPNGL
NDEPQYVLEI DDERARALGL SLADINSTVS IAWGSSYVND FIDRGRVKRV YLQGRPNSRM
SPEDLNKWFV RNDKGDMVPF SSFATGKWGF GSPKLQRYNG VPAVEILGEP AAGKSSGEAM
AAVEEIMKQM PAGISYSWTG LSYEERLSGS QAPALYALSL LVVFLCLAAL YESWSIPFSV
MLVVPLGVIG ALLATLARGL SNDVFFQVGL LTTVGLSAKN AILIVEFAKE LHDHGKGLVE
AAVEACRMRL RPIIMTSMAF MLGVFPLAVS QGAGAGSQHA IGTGVIGGMI TATVLAIFWV
PLFFVVVSAL KERRGKSDSS SLEKGAQA
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