| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_3922 |
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| Symbol | ydjQ |
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| ID | 4040775 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cupriavidus metallidurans CH34 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007974 |
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| Strand | - |
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| Start bp | 471045 |
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| End bp | 472637 |
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| Gene Length | 1593 bp |
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| Protein Length | 530 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 637979341 |
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| Product | DNA polymerase III subunit epsilon |
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| Protein accession | YP_586059 |
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| Protein GI | 94312850 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0322] Nuclease subunit of the excinuclease complex
[COG0847] DNA polymerase III, epsilon subunit and related 3'-5' exonucleases |
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| TIGRFAM ID | [TIGR00573] exonuclease, DNA polymerase III, epsilon subunit family |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.0000050364 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.710356 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCCTCC AAGAACCGCC CACCTACCTT CCAGAGAAGT TGACCAGCCG CGAGCCCGGC
ATGCTCGATG CACAGGCGCT TGCTGCCGCG CTTGCCCGGC CTATTGTATT TGTCGATCTG
GAAACAACCG GGGCGGACGC GCAGCGAGAC CGCATCACCG AAATCGGTGT GGTCGAAGTC
GGCCCCGACG GCATTCAGGA ATGGGACACG CTGGTCGATC CCCTGACCAG CATCCCACCG
TTCGTACAGG GACTGACCGG CATCACCGAC GAAATGGTCC GCGGCCAGCC CACCTTTGCA
TTGATTGCCG AAGCCCTGGC CGAGAAGCTG CAAGGCCGCC TGTTCGTCGC CCACAATGCG
CGCTTCGACT ATGGGTTTCT GAAGAACGAG TTCCGCCGCG CTGGCGTGAC CTTCCGTGCG
GACGTACTTT GCACGCTTCG TCTGTCCCGG TCGCTCTTTC CGTCCGTCGA GCGCCATGGC
CTGGATGCCC TGATCGCCCG CTTCGGCCTG ACGCCGAAGG GTCGGCACCG CGCGCTAGCC
GATGCCGAGC TGCTCTGGCA GTTCTGGCAG AAGATTCACG AGATCTATTC GGTCGACCTG
GTCGAATCCG CCGTAACGTC GCTGGTCAAG CACGCCAGCC TGCCAGCGGG TCTGGAAGAA
GCTGCATTGG ACGATGTACC GGATCGCCCG GGCGTCTATC TCTTCTATGG CGACGACGAC
GTGCCGCTCT ACGTTGGCAA GAGCATCCAT CTGCGCCAGC GCATTCGCGC CCACTTCGCC
GGGGATCACA GCAACGCCAG GGAGATGCGG CTGTCCCGCT CCGTGCGTCG CGTCGAGTGG
CGCGAGACCG GAGGAGAAAT CGGCGCACTG CTGAGCGAGG CGCATCTGGT CAAGACACTG
CGCCCGCTGC ACAACCACCT GCTGCGCCAG AACACCGAGC TGTTCTCCTG GGAAATGCTC
GACGGGCTGC CTGCGCCGCG CCTGCGTTCG GATCGTCACG TCGATTTCAG TCGACACGCC
GCACTATATG GTGCATTTCC GAGCCGGGCC TCCGCGCAAG CGCGCCTGCG ATCGCTGGCG
GATGAACACC GGCTTTGCCT GGCGACGCTG ATGCTCGAAG GCACCACCCG CCGGGGCAGC
CCTTGTTTCG CGCGGCAGTT GCACCGATGC GCGGGCGCCT GCACCGGGGA GGAATCCCAG
ACGGCCCATC GGGAACGCAC CGTGGAAGCA ATGGCTTCCA TGGCCATCCA GCGCTGGCCG
TTTGCAGGAG CAATTGCCTG GCGTGAAGCT TCCGGCGATC GTTTCCCCTG GCACATCATC
GAAGACTGGT GCTACCTGGG CTCGGCCCCC ACGCTTGAGG ACGCCGCCCG GCAATTGGTC
GCGCCGGCCC GCTTCGACAT CGATACCTAC CAGATCCTGG CCCCGCGGAT CGAGGAGTTG
AAGGCCAGCG CCGTACCCCT GTTATCTACA CGCGAGTTCG TGCTGACGCC GCCGGTCCTC
CCGGAGCCCA GAGCGGCCCG CGTGCCTCGC ACGGCGGGAA AGCGTACGGC AAACGCCTCG
GAGCACAGTC AGACGCCGGG GCTCTTCAGC TAA
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| Protein sequence | MTLQEPPTYL PEKLTSREPG MLDAQALAAA LARPIVFVDL ETTGADAQRD RITEIGVVEV
GPDGIQEWDT LVDPLTSIPP FVQGLTGITD EMVRGQPTFA LIAEALAEKL QGRLFVAHNA
RFDYGFLKNE FRRAGVTFRA DVLCTLRLSR SLFPSVERHG LDALIARFGL TPKGRHRALA
DAELLWQFWQ KIHEIYSVDL VESAVTSLVK HASLPAGLEE AALDDVPDRP GVYLFYGDDD
VPLYVGKSIH LRQRIRAHFA GDHSNAREMR LSRSVRRVEW RETGGEIGAL LSEAHLVKTL
RPLHNHLLRQ NTELFSWEML DGLPAPRLRS DRHVDFSRHA ALYGAFPSRA SAQARLRSLA
DEHRLCLATL MLEGTTRRGS PCFARQLHRC AGACTGEESQ TAHRERTVEA MASMAIQRWP
FAGAIAWREA SGDRFPWHII EDWCYLGSAP TLEDAARQLV APARFDIDTY QILAPRIEEL
KASAVPLLST REFVLTPPVL PEPRAARVPR TAGKRTANAS EHSQTPGLFS
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