Gene Rmet_3900 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRmet_3900 
Symbol 
ID4040753 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCupriavidus metallidurans CH34 
KingdomBacteria 
Replicon accessionNC_007974 
Strand
Start bp445274 
End bp446470 
Gene Length1197 bp 
Protein Length398 aa 
Translation table11 
GC content66% 
IMG OID637979319 
Productextra-cytoplasmic solute receptor 
Protein accessionYP_586037 
Protein GI94312828 
COG category[S] Function unknown 
COG ID[COG3181] Uncharacterized protein conserved in bacteria 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value0.264332 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value0.374616 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGACGGGGG GCGCGGACTG GCGTGGATGC GGGTTATCCC GCGACTTTTT CATGCCCTCG 
CCCCCCCTTC GGCAAAGCCG AATTGTGCCG CCGGGTCAGT GGATTCACGC TGCGCGCTAC
TCGAATCCCA GAAACCAGAC GCGTATGACG CGCGCATTCA GGAGACAGCG TATGACCACA
TTCCCGCAGT TGCCAGCCAT CGGTACCGGC AAGTGGCGAG GCATGACGTG GGCGGCACTC
GCGCTAGCAG CCGTGGCGGT GGCTGTTCCC GGCCAGGGCC GAGCGAATGA TGCCTACCCC
TCCAAGCCCA TCGTGATGGT CGTGCCATTC GCGGCGGGTG GCCCGACGGA CGTCGTGGCG
CGCTCGGTGG CGGCGGCGAT GTCCAAGACG CTGGGCCAGA GCGTGGTGGT GGAGAACCGT
CTGGGTGCCG GCGGCACGGT GTCCGCTGCG TACGTGGCCA AGGCCGCGCC GGACGGCTAC
ACGATCCTGA TTCACCATAA CGGCATGGCC ACCGCGCCGG CGCTCTACTC GAAGCTGCCG
TACAAGCCGC TGACCGACTT CAGCTTCGTG GGCCAGGTGG CGGATGTGCC GATGACGCTG
CTGGGACGCC ACGATCTGCC GCCCAACAAC CTGCCCGAGC TGGTGACCTA CATCCAGAAG
AACCAGAACA AGGTGAACCT GGCCAACGCG GGGCTGGGCG CGGTGTCGCA GTTGTGCGGG
ATGCTGTTCC AGAAGGCGAT CGGCGTGGAT GTGCAGACGA TCCCATACCA GGGCACCGCG
CCGGCGATGA CTGCGCTGCT GGGTGGTCAG GTGGATGTGC TGTGCGACCA GACCACGCAG
ACGCTTACCC ATATCAAGGC TGATAAGGTC AAGCTGTACG GCGTGACCAC GGCTGAGCGC
ATTCCCGCGC TACCGAACGC GCCGACGCTG CGCGAAGGCG GCCTGAAGGG CTTCGAAGTC
AAGGTCTGGC ACGGGATCTA CGCGCCCAAG GGCACGCCGC CTGCCGTGAT CAACAAGCTC
AACGGCGCGT TGCGCGCGGC GCTGAAGGAC CCGGCCGTTG CGGCGCGTAT GCAGGATCTG
GGCGCGGTGA TCGTGCCCGA GGACAAGCAG ACGCCGGAAG GGCTGCGCAC GTGGCTGGCC
TCGGAGATCG ACAAGTGGTC GCCGATTATC AAGGCGGCTG GCGTGAAGGC GGACTAA
 
Protein sequence
MTGGADWRGC GLSRDFFMPS PPLRQSRIVP PGQWIHAARY SNPRNQTRMT RAFRRQRMTT 
FPQLPAIGTG KWRGMTWAAL ALAAVAVAVP GQGRANDAYP SKPIVMVVPF AAGGPTDVVA
RSVAAAMSKT LGQSVVVENR LGAGGTVSAA YVAKAAPDGY TILIHHNGMA TAPALYSKLP
YKPLTDFSFV GQVADVPMTL LGRHDLPPNN LPELVTYIQK NQNKVNLANA GLGAVSQLCG
MLFQKAIGVD VQTIPYQGTA PAMTALLGGQ VDVLCDQTTQ TLTHIKADKV KLYGVTTAER
IPALPNAPTL REGGLKGFEV KVWHGIYAPK GTPPAVINKL NGALRAALKD PAVAARMQDL
GAVIVPEDKQ TPEGLRTWLA SEIDKWSPII KAAGVKAD