Gene Rmet_3844 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRmet_3844 
SymbolrpoT 
ID4040538 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCupriavidus metallidurans CH34 
KingdomBacteria 
Replicon accessionNC_007974 
Strand
Start bp388149 
End bp389009 
Gene Length861 bp 
Protein Length286 aa 
Translation table11 
GC content66% 
IMG OID637979263 
ProductRNA polymerase sigma factor SigJ 
Protein accessionYP_585981 
Protein GI94312772 
COG category[K] Transcription 
COG ID[COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog 
TIGRFAM ID[TIGR02937] RNA polymerase sigma factor, sigma-70 family 


Plasmid Coverage information

Num covering plasmid clones37 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value0.577317 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGTGGCGG ACGCCGGTCT TTCGGAAGCC GCGGCGAGCT TCGAGCCATT GCGGCCCAAG 
CTGATCCGCG TCGCGTACCG GATGCTCGGT TCGGTCGCGG ATGCGGAGGA CGTGGTGCAG
GAAGCGTTCA TCCGTTGGAT GAACGCCGAG CGCGCCGAGG TGCGTGTGCC CGAGGCGTTC
CTGCGGCGCA TGGTGATGCG GATGTGCCTC GACGAGCTGA AATCGGCGCG TCACCAGCGC
GAAACCTACA TCGGTCCCTG GCTTCCCGAC CCGGTCATCG AGGAAGAGGA GCAGGACGAC
GTCACGCTGC CGCTGATGCT GGCGCTCGAA CGCCTGTCGC CTCTCGAGCG CGCGGCGTTC
CTGCTGCACG ACGTGTTCGG CCTCGCGTTC GATGAGGTGG CGGCGACGAT CCAGCGCGAG
CCGGCCGCGT GCCGGCAGCT TGCGGCGCGG GCGCGTGCCA ATGTGAGGGA ATCGCGCCCG
CGTTTTCAGG TCGAGAAGGA GCGGGGCCTG GCACTCGCAA AGGCATTCTT CGACGCCTCA
CGCAGCGGAG ACATGGGCAC GCTCAGCACG ATGCTGGCGG CCGATGTGAG CCTGCATGCG
GACGGCGGCG GCCAGCGCCC GGCGATTGGC CATCCGGTGT TCGGCTTCGA CGAGGTAATG
CGTGTGCATG AACAACTGTC GAAATACTTC CAGAAGAATG GCTCGACCTT TGTCCGCGCG
GCTTTCATCA ACGGGTTGCC GGGCATCGTC ACGCGCGAAT CCGACGGCGA ACTGCAGACG
ACGGCGCTAG AGATCGAGGG CGGCAAGATC GCGGCAATTT ATGTGGTGCG CAACCCGGAC
AAGCTGCGGC ATCTGCATTA A
 
Protein sequence
MVADAGLSEA AASFEPLRPK LIRVAYRMLG SVADAEDVVQ EAFIRWMNAE RAEVRVPEAF 
LRRMVMRMCL DELKSARHQR ETYIGPWLPD PVIEEEEQDD VTLPLMLALE RLSPLERAAF
LLHDVFGLAF DEVAATIQRE PAACRQLAAR ARANVRESRP RFQVEKERGL ALAKAFFDAS
RSGDMGTLST MLAADVSLHA DGGGQRPAIG HPVFGFDEVM RVHEQLSKYF QKNGSTFVRA
AFINGLPGIV TRESDGELQT TALEIEGGKI AAIYVVRNPD KLRHLH