| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_3769 |
|---|
| Symbol | alkB1 |
|---|
| ID | 4040604 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cupriavidus metallidurans CH34 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007974 |
|---|
| Strand | - |
|---|
| Start bp | 305913 |
|---|
| End bp | 306497 |
|---|
| Gene Length | 585 bp |
|---|
| Protein Length | 194 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637979190 |
|---|
| Product | alkylated DNA repair protein alk |
|---|
| Protein accession | YP_585908 |
|---|
| Protein GI | 94312699 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG3145] Alkylated DNA repair protein |
|---|
| TIGRFAM ID | [TIGR00568] DNA alkylation damage repair protein AlkB |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 52 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGTGCTGC GCGGATTCGC GCTGCCTTAT GTGCCCGATC TGATGCCTGC CATTGCGGGC
ATCGAGACGA CTTCGCCCTT TCGGCATATG GTCACGCCGG GCGGTTTCAC CATGTCGGTG
GCGCTAACGA ATTGCGGCGC GTTGGGCTGG ACGACCGACC GGCGCGGCTA TCGCTACACC
ACCGTTGATC CCGATACGGG AAAGCCCTGG CCGGTCATGC CGGAGGTATT CTTTCGGCTG
GCAAATGAGG CTGCTGCTGA GGCGGGCTTT GACGACTTCG AGCCCGACGC CTGCCTGCTC
AATCGCTACC TGCCTGGCAG CAGACTTGCG CTGCACCAGG ACAAGAACGA GCAAGCCTAT
GAGACGCCGA TCGTTTCGGT ATCTCTGGGC ATGCGGGCTA CGTTCCTGTT CGGCGGTCAT
GCGCGCACCG CCCCCACGAT CAAGGTACCG CTCCACCACG GGGACGTAGT GGTGTGGGGC
GGCGCCGATC GTCTGCGCTA CCACGGCGTA ATGCCGATCA AGGATGCACC TCATGCGCTG
CTGGGCAGCC AGCGCATCAA TTTCACTTTC CGAAAAGCGG CCTAG
|
|---|
| Protein sequence | MVLRGFALPY VPDLMPAIAG IETTSPFRHM VTPGGFTMSV ALTNCGALGW TTDRRGYRYT
TVDPDTGKPW PVMPEVFFRL ANEAAAEAGF DDFEPDACLL NRYLPGSRLA LHQDKNEQAY
ETPIVSVSLG MRATFLFGGH ARTAPTIKVP LHHGDVVVWG GADRLRYHGV MPIKDAPHAL
LGSQRINFTF RKAA
|
|---|
| |