| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_3692 |
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| Symbol | cheD |
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| ID | 4040663 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cupriavidus metallidurans CH34 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007974 |
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| Strand | + |
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| Start bp | 231890 |
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| End bp | 232552 |
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| Gene Length | 663 bp |
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| Protein Length | 220 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 637979115 |
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| Product | chemoreceptor glutamine deamidase CheD |
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| Protein accession | YP_585833 |
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| Protein GI | 94312624 |
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| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
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| COG ID | [COG1871] Chemotaxis protein; stimulates methylation of MCP proteins |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.000909958 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.0208475 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGATGCGTG GCACGCCCCA GATGCCGGAG GCCATCGCCA CCCGGAAGTA TTTCGACCGC
GAATTCGACC GGCAGGCCAT CAAGCTGTTG CCCAACGAGT ACTACGTGAC GGCCGAGGAC
GTCGTACTCA CGACCGTCCT GGGATCGTGC GTGTCCGCGT GCATTCGCGA CGAAGTGGCC
GGCGTCGGCG GCATGAACCA TTTCATGCTG CCCGACGACG AGAACGCCGG CGCCGACCGG
ATGCTCTCTA CGTCGATGCG CTACGGCTGC TACGCGCTCG AAGTGCTTAT CAATGAACTG
CTGAAGATGG GCGCGCGTCG TGAACGGCTG GAGGCCAAAG TATTTGGCGG TGGCGCGGTG
CTGGCCAACA TGACGACCCT AAATATCGGG GATCGGAATG CCGATTTCGT ACTGAAGTAC
CTGCGCACGG AAGAAGTGCG CGTGGCCGCG CAGGATCTGC GCGGACCGCA CGCGCGACGT
GTCAGCTACT TTCCACGTAC CGGCCTTGCA CTGGTCCGCC GGCTGACGCG CCAGGACGAT
ACCGTAGGCA TCGAACGCGA GGAACGTGCC CTGGCACGCG CGCTGTCCAC GTCGACGAAG
GCACCCGCGC GAGGCGCCGT GGAACTGTTC ACGCGACAGA CCACGGCCAG GATCCCGACC
TGA
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| Protein sequence | MMRGTPQMPE AIATRKYFDR EFDRQAIKLL PNEYYVTAED VVLTTVLGSC VSACIRDEVA
GVGGMNHFML PDDENAGADR MLSTSMRYGC YALEVLINEL LKMGARRERL EAKVFGGGAV
LANMTTLNIG DRNADFVLKY LRTEEVRVAA QDLRGPHARR VSYFPRTGLA LVRRLTRQDD
TVGIEREERA LARALSTSTK APARGAVELF TRQTTARIPT
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