Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rmet_3664 |
Symbol | sbcC |
ID | 4040480 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Cupriavidus metallidurans CH34 |
Kingdom | Bacteria |
Replicon accession | NC_007974 |
Strand | + |
Start bp | 199707 |
End bp | 202760 |
Gene Length | 3054 bp |
Protein Length | 1017 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 637979087 |
Product | dsDNA exonuclease SbcC |
Protein accession | YP_585805 |
Protein GI | 94312596 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0419] ATPase involved in DNA repair |
TIGRFAM ID | [TIGR00618] exonuclease SbcC [TIGR03185] DNA sulfur modification protein DndD |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAACCGC TTTACCTGAA ACTGCAGGCC TTCGGCCCGT TCGCCGCCAC GGAGACGATT GACTTCACGC GGCTCGGCGA CCAGGCGTTC TTCCTGATCC ACGGCCCCAC GGGCGCAGGC AAGACCACGC TGCTCGATGC CATCTGCTTC GCGCTCTATG GCGATACATC AGGTGGCGAG CGCAGCGCGC AGGACATGCG CAGCGCCAAT GCGGACCCAG CCCTGCGGAC CGAGGTCACC TTGGAGTTCT CGCTTGGGGC GACACGCTAT CGCGTGACGC GTTCTCCGAC GCAGGACCGC CCGAGCCCGC GTGCGGCCGG CGGCTTCGTC AAGGAGACTG CGAAGGCGCA GCTCGATGCC CAGGTGGACG GTGAGTGGAA AAGCCACGCC AGCCAGCCGG TCCGTGTGAC CGACGCGGTG CGAGTCCTGC TCGGCTTCGA CAGCGCGCAG TTCCGGCAGG TGATCGTGCT GCCGCAGGGA CGTTTCCGCG AATTGCTGAC GGCGGACTCG AAGGCGCGGC AGTCGATCCT CGAGCGTCTG TTCCAGACCG AGCTCTACCG CCGCGTCGAG GAACTGCTCA AGGAGCAGGC CGCGAGCATT CGCCGCGAAG CCGAGGAGAT CTCGGTACGA CGCAAGACCT TGCTGGAACA GTATCAGTTG CCCTCCGAGC TGGCGCTTGA CGAACGTATC GCCGCGCATC GGGAGACGTT GACCGAGCTG GAACGGCGCG AAGCGCTGGC GCGTGCGGGT AGCGAAGCGG CGCAGGCGTC CTTGCGCAAG GGCGAGCTGG AGAGCACGCA GATCAAGGCC TGGAAAGAGG CGGAGGGCGC CTATGCCGTG CTGTCGGCCC GCGTGCCGGC GGTCGACACG GACCGCGCTC GCCTGCAGGC CGCGCGACGC GCGGCGCAGG TGACGCCGGT TGCGCAACTG CTTGAGGTTG CCAGACAGGA TCAGACGGCC GCACTCGCCG CGAATGCCGC CGCCGGGACA CGCGTGGCAA GCGCCAGCCG GGCCGCCGAT ATCGCAACAG GTGCGCTGCG CGCGGAACAG GCGCGTGGCG AAGCGCGTTT GGCCGCGCAA CGCACCGTGG CGAAACTGGA AGCAATTCTC CCGCAGGCAC GCAGGCTTGG CGTGCTGCGC AACGGCGTGG CGCTGGCGAG TACCGGACTG GCCGCTGCCC AGGTGGCGCT TACCGCCAAG GCGAAGGCGC GCGATGCCGC CGTGGCGGCG GCGAAGACGC TGGAAGGCGA GCTGGAGCTT GCGCGGCGCG ACGGCGCAAA TGCGCAGGCC CTGCAGCTTC AGCTTGGACT GGCGCGCGAA CGCGCGACGC GGGTGGCACG TTGCCGGCAA CTCGATGCCG AACTTGGGCC TTTGCGCGAA TCGCTTGCCG CTGCGGAAGC CGGCGCCAGC CGGGCGACGC AGACGCGCGA TACCGCGCGC GTCGCAATGC GTCAGGCGGA ATCGGACTGG CGCTTTGGCC AGGCGGCACG CCTTGCCGCT GGCGTGAAGC GTGGCGAACC TTGCCCCGTC TGTGGTGGCA AGGACCACCC TGCGCTGGCG CAGCAGACGC TGGCGCTGGT GACCGACGAG GACCTCGATA CCACGCGAGC CGTCTTGCAA CATGCCGACG AGGCGTTGGC CGACGCGCAG GCCGTGCGAC AAAAGGCCGA GGCAAACGTC GCCCAATGTC AGGTGCGTCT GGCGGATCTG CGCGAAGGCG CGGGCGATGT GTCCGACGCG GGCGTGCAGG CGTTAGATCA GGAAATCCAG ACGCTGACCG CCAGCGGCGC GAAGGCCGAG GCTGCGGCAA CCCGCGCGGA ACGGCTCGCG GCCCAGACCA TACAGGCGCG TCAGGCGCAG GAGTCTGCCG AAGCCGCAGT GCAGGCGGCC GAAGGCGCAT TGCGCACGGC GATGCATGAG CACGCTCAGC AAGATGGCGA GTGGCGTGCC GCGAGTGCGC AGGTGCCCGA GGATTCGCGT GACCCTGACG TCGTGACCGC ATCGCTCGAA GCCGCGCAGC GCGAAGCCGG CGCACTGGAG GCCGCATTGC AGGCGGCCCA GGGCGCCGAG CGCGATGCGG TGGCACTGCT GGCCGGTGCG AATGCGGCAC TGGCCGCCGC GCGCGAAGCC ACTACTCGTG CCGAGGAGCG GGCCGCGCAA CGCGAAGCCG CCTTTGTGGA GGCACTTGCC ACCGCCGGAT TCGCCGGAGC GGACGACTAC CGCGCCGCAT CCCTGGCTGA CGATGCCACG CGCGTGCTTG ACGACGCCGT GCGTGCGTTC GATGTCGATC TGGCTCGCGC CGCGGAATGG CGCCAACGCA CGGCGGAAAT CGGTCAGGCG TTGCAGACGC CGGACATGCC TGCATTGCTC GCGGCACGCG ATGCGGCGGC TGTTCAGCTT GAAGCGGCGA TCCGGCAGCG CAGCGAACTG GCCGCGGTGC GCGATGCGCT GTTGCAGTGC AAGGGCTTGC TCGATTCGCT GGCCGCCGAA GGACGCGACG TCGAGACGCG CTACGCAGTG CTCGGCCGCC TGTCGGAAGT GGCGAACGGC AATAATCCGC GCCGCATGAC GTTCCAGCGT TTCGTGCTGG CCACGTTGCT CGACGAGGTG CTGGAAGCTG CGTCGCTACG GCTGTTGCGC ATGAGCCGGG GTCGCTACGC GCTGCAACGT GTGCGAGAGC AGGGCGATCA GCGCGTGGCC GGTGGCCTTG ACCTCGAAGT GTTCGACCAC GATACCGGCG GCACGCGCCC GGCCAATACG CTGTCCGGCG GCGAAGGCTT CCTGGCGTCA CTGTCGCTGG CGCTGGGTCT GGCCGATGTG GTGCAGTCGC GTGCCGGTGG CATCCAGCTC GATACGCTGT TCGTTGACGA AGGCTTCGGC ACGCTCGATC CGGAAAGTCT CGACTTCGCG ATTCGCACGC TGCTCGATCT TCAGCAGGCC GGACGGCTGG TCGGCATCAT CTCGCACGTA ACCGAACTGC GCGAGCGGAT CGACGTGCGG CTTGAGGTCC GGCCCGGCGT GGCGGGCAGT CAAGCCGTGT TGCGCCTGCC CTGA
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Protein sequence | MKPLYLKLQA FGPFAATETI DFTRLGDQAF FLIHGPTGAG KTTLLDAICF ALYGDTSGGE RSAQDMRSAN ADPALRTEVT LEFSLGATRY RVTRSPTQDR PSPRAAGGFV KETAKAQLDA QVDGEWKSHA SQPVRVTDAV RVLLGFDSAQ FRQVIVLPQG RFRELLTADS KARQSILERL FQTELYRRVE ELLKEQAASI RREAEEISVR RKTLLEQYQL PSELALDERI AAHRETLTEL ERREALARAG SEAAQASLRK GELESTQIKA WKEAEGAYAV LSARVPAVDT DRARLQAARR AAQVTPVAQL LEVARQDQTA ALAANAAAGT RVASASRAAD IATGALRAEQ ARGEARLAAQ RTVAKLEAIL PQARRLGVLR NGVALASTGL AAAQVALTAK AKARDAAVAA AKTLEGELEL ARRDGANAQA LQLQLGLARE RATRVARCRQ LDAELGPLRE SLAAAEAGAS RATQTRDTAR VAMRQAESDW RFGQAARLAA GVKRGEPCPV CGGKDHPALA QQTLALVTDE DLDTTRAVLQ HADEALADAQ AVRQKAEANV AQCQVRLADL REGAGDVSDA GVQALDQEIQ TLTASGAKAE AAATRAERLA AQTIQARQAQ ESAEAAVQAA EGALRTAMHE HAQQDGEWRA ASAQVPEDSR DPDVVTASLE AAQREAGALE AALQAAQGAE RDAVALLAGA NAALAAAREA TTRAEERAAQ REAAFVEALA TAGFAGADDY RAASLADDAT RVLDDAVRAF DVDLARAAEW RQRTAEIGQA LQTPDMPALL AARDAAAVQL EAAIRQRSEL AAVRDALLQC KGLLDSLAAE GRDVETRYAV LGRLSEVANG NNPRRMTFQR FVLATLLDEV LEAASLRLLR MSRGRYALQR VREQGDQRVA GGLDLEVFDH DTGGTRPANT LSGGEGFLAS LSLALGLADV VQSRAGGIQL DTLFVDEGFG TLDPESLDFA IRTLLDLQQA GRLVGIISHV TELRERIDVR LEVRPGVAGS QAVLRLP
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