Gene Rmet_3620 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRmet_3620 
SymboldegP 
ID4040510 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCupriavidus metallidurans CH34 
KingdomBacteria 
Replicon accessionNC_007974 
Strand
Start bp155450 
End bp156913 
Gene Length1464 bp 
Protein Length487 aa 
Translation table11 
GC content63% 
IMG OID637979043 
Productmultifunctional serine-type endopeptidase /oxidoreductase 
Protein accessionYP_585761 
Protein GI94312552 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG0265] Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain 
TIGRFAM ID[TIGR02037] periplasmic serine protease, Do/DeqQ family 


Plasmid Coverage information

Num covering plasmid clones44 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones24 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATTCGTC AGACTCTCGC CCGCTCTGCT GTCGGTGTCG CTGCCTTGGC TGCCCTTGCC 
GGCGGCTACG CGTATCTGCA GAAGGATGCG ATCACCCCGG GATACGCCGC ACAGACCCCG
GTCACCGCAA GCGCAGGACC GATTGCAGTC GCCACGCCAA CGGATTTCTC GAGCATCGTG
GATCAATATG GCCCAGCCGT CGTGAACATC AGCGTGACCG CGCGCGCCCA GCGTACTTCG
GCACAAGTGC CGCAGGGCGT CGATCCGGAT GACCCGCTGT TCCAGTTCTT CAAGCGATTC
GGCCCGCAGT TCCAGGGGCC GCAGAATGCG CAGCCGCAGC TGGTGCGTGG ACTAGGCTCG
GGATTCATCG TTAGCCAGGA CGGTCTGATC CTGACGAATG CGCACGTGGT CGACAACGCT
ACCGAAGTCA CGGTGAAGCT CACAGACCGC CGCGAGTTCA AGGCCAAGGT GTTAGGCAGC
GATCCGCAGA CTGACATCGC GGTGATTCGC ATCGATGCAA AGAATCTCCC CACGGTCCGG
CTGGGCGACC CGTCGAAAAC CCGCGTTGGC GAGCCGGTGC TCGCCATTGG GTCCCCGTAC
GGCTTCGAGA ACACGGTCAC TGCCGGTATC GTCAGTGCCA AATCGCGTTC GCTGCCCGAT
GACACCTACG TGCCGTTCAT CCAGACCGAC GTTGCGGTGA ATCCCGGCAA TTCCGGCGGT
CCGCTGTTTA ATCAGCGCGG CGAAGTGATC GGCATCAACT CGCAGATCTA CAGCCAGACT
GGTGGCTATC AGGGCCTCTC GTTTGCCATC CCGATCAACG TAGCGACCAA GGTCGAGGAG
CAACTCGTAG CCCATGGCAA GGTCACGCGC GGCCGTCTCG GTATCTCGGT TCAGGAAGTG
AACCAGGCGC TTGCGCAGTC GTTCAACTTG CCGAAGCCTG CGGGTGCGCT GGTTAATTCG
GTGGAACCGG ACAGCCCCGC GGCGAAAGGT GGTGTGAAGG CTGGCGACGT GATCGTGCAG
CTCGGCGATG ACGTCATCGA TCATTCCGGT GATCTGCCCG AGCATGTGGC CGACCTCAAG
CCGGGCACTG AGACGAAGCT CAAGGTCATC CGCAAGGGGC AACCGATGAC GCTGACGGTC
CAGGTCGGGG CGGTGAAGGA AGACGCCCTG GCTCAGAAGG GTAACGGTGG TCAGGACGGC
GGACGCCTGG GTCTTGCGGT TCGTCAGCTG ACGCCTGCGG AGAAGCGCGA CAGTGGCATA
GACGGCGGCC TCGTGGTCGA AGACGTGACG GGACCCGCTG CGCGAGTAGG TATCCAGCCG
GGCGATGTCA TTCTCTCACT GAACGGCACG CCGATCTCTT CCGCCGAGCA ACTGCGAACG
CTGGTGTCCA AGTCTGGCAA GCAGGTGGCA CTGCTGGTAC AGCGTGACGA TGCGCGGATT
TTCATCCCGC TCGACCTCGG CTGA
 
Protein sequence
MIRQTLARSA VGVAALAALA GGYAYLQKDA ITPGYAAQTP VTASAGPIAV ATPTDFSSIV 
DQYGPAVVNI SVTARAQRTS AQVPQGVDPD DPLFQFFKRF GPQFQGPQNA QPQLVRGLGS
GFIVSQDGLI LTNAHVVDNA TEVTVKLTDR REFKAKVLGS DPQTDIAVIR IDAKNLPTVR
LGDPSKTRVG EPVLAIGSPY GFENTVTAGI VSAKSRSLPD DTYVPFIQTD VAVNPGNSGG
PLFNQRGEVI GINSQIYSQT GGYQGLSFAI PINVATKVEE QLVAHGKVTR GRLGISVQEV
NQALAQSFNL PKPAGALVNS VEPDSPAAKG GVKAGDVIVQ LGDDVIDHSG DLPEHVADLK
PGTETKLKVI RKGQPMTLTV QVGAVKEDAL AQKGNGGQDG GRLGLAVRQL TPAEKRDSGI
DGGLVVEDVT GPAARVGIQP GDVILSLNGT PISSAEQLRT LVSKSGKQVA LLVQRDDARI
FIPLDLG