| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_3566 |
|---|
| Symbol | |
|---|
| ID | 4040415 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cupriavidus metallidurans CH34 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007973 |
|---|
| Strand | + |
|---|
| Start bp | 3867815 |
|---|
| End bp | 3868891 |
|---|
| Gene Length | 1077 bp |
|---|
| Protein Length | 358 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 637978984 |
|---|
| Product | peptidoglycan-binding LysM |
|---|
| Protein accession | YP_585707 |
|---|
| Protein GI | 94312497 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG1652] Uncharacterized protein containing LysM domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 67 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 32 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCGGTTC AGGCCGCTGA CCTGAGCGTC TCGCCGGTCC AGCTTGCGGA GGCCGATCGC
ACGGCACAGC AGGGCATCCC CGTTGCCGAC CTCTCGCCCA ATGCGCCCAG TCAGTATACG
GTGCGTTCGG GCGACACGCT TTGGGGCATT TCCGGACAGT ACCTGCGCCA GCCCTGGCGC
TGGCCCCAGC TGTGGGGCAT GAACCGGCAG CAGGTCCACA ATCCTCACCT GATCTATCCG
GGCCAGATTC TTTATCTGGT CCAGCGCGAT GGCCGCGCCT ACCTGTCCAC CAACCCTCCG
GGCGGTGCCA GCGGCGACGT CCGCCTGTCC CCGCGCATTC GCGGGAATGG TGGCGACGGC
GAGGCCATCC AGAGCATTGC CTCCAGCGAT ATCGAGCCGT TCCTGATCCG TCCGCTCGTC
GTTGACCAAG GCACGGTGGA TACCTCGGCG CGCATCGTCG CTCTGCCCGA CGCCCGTGTC
TATATGGGGC GCGGTGACAT GGCCTACGCG CGTGGCATTG CGCCGGCCGA CGCCTCGCTC
GGCAGCGACT GGCAGGCATT CCGGCCGGCC AGCCCCGTGC TCGATCCGGT CACCGGCCGG
GTAATCGGCT TCGAGGCGGC TTACGAAGGC AGCGTGCGCG TGACGCGCGG ACCCGAGGGC
CCCAACGCGG TGACCACGGT CCAGGCCACC CAGTCCCTGC AGGAAATCGG TCCGGGATCG
CTGCTGCTGC CGCAGCCGCA GCGCGAACTG ATCCGCTATG TGCCGCATGC TCCCGATGGT
GAAGTCGAGG GACGTGTCGC CGCGGTGTAT GGCGGCGTGC GCTATGGCGG CGCCAAGCAG
ATCGTGGTGC TCAATATTGG CGCCAACGCC GGTCTGGAGC CGGGCCACGT GCTGGCGCTC
TCGAGCGATG GCGGCCACGT CGCCGATCCG ACCGATGGCA ATCGCGCTAT CGAGTTGCCC
GATGATCGCT ACGGTCTCGC GTACGTCTAC CGCGTGTTCC CGGGCGTTGC GTACGCGCTG
GTGACCGACG CGTCCAACGT GATGAAGGTT GGCGATATCG CCTCGACGCC GCGCTGA
|
|---|
| Protein sequence | MAVQAADLSV SPVQLAEADR TAQQGIPVAD LSPNAPSQYT VRSGDTLWGI SGQYLRQPWR
WPQLWGMNRQ QVHNPHLIYP GQILYLVQRD GRAYLSTNPP GGASGDVRLS PRIRGNGGDG
EAIQSIASSD IEPFLIRPLV VDQGTVDTSA RIVALPDARV YMGRGDMAYA RGIAPADASL
GSDWQAFRPA SPVLDPVTGR VIGFEAAYEG SVRVTRGPEG PNAVTTVQAT QSLQEIGPGS
LLLPQPQREL IRYVPHAPDG EVEGRVAAVY GGVRYGGAKQ IVVLNIGANA GLEPGHVLAL
SSDGGHVADP TDGNRAIELP DDRYGLAYVY RVFPGVAYAL VTDASNVMKV GDIASTPR
|
|---|
| |