Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rmet_3547 |
Symbol | |
ID | 4040395 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Cupriavidus metallidurans CH34 |
Kingdom | Bacteria |
Replicon accession | NC_007973 |
Strand | + |
Start bp | 3845944 |
End bp | 3847707 |
Gene Length | 1764 bp |
Protein Length | 587 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 637978964 |
Product | diguanylate cyclase |
Protein accession | YP_585688 |
Protein GI | 94312478 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2199] FOG: GGDEF domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 29 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 28 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCATGGC ACAAACTGCT TCCGCGGCCG CGCTGGCTGC CGCGCGCGGC ACTGATATAT CCGCAGCGCG TGGTGGTGGT GGGATTTGGC CTGGCGATGC TGCTGATGCT TGTCGTGGCG ATGCGCGACC TTTACCTGCT GCGCGAGCGC GTCCTGATCC TGCATCAACA CGATCTGGTG CTGCGCGCAC TTGGCGCGGA AGCGGTTATC AATGCGGAAC GGTTCAAGTT ATCGTTCGTG CGCGATTACG CGCAGCAGCT TCTCGAACTC CAGCAGGGTA CGAAAGCGTC CACTGACGGC GATATCGAAC GTGCCTATGC GGCACGCAAT GAACCTGTCT GGGAATTGCA GGTACCACTT GGCGACGCGC CGATCGTGGG GGTGTCGCCC CAGATCCTGA AAGGACTGCA AGGTTTCGAA CGCCGCGACG AGGACCTGCG GGCGGATCTG CTGGCCGCGC GTCAGCTCAG CCATGTGCTG GGTGTCAGCC AGCGCAGCGA CCGTCCCGAT GGCACGGTGA CGTTCATCTC GAGCAACGGC TTTTACGTGA CATATCCCGC GTTGCCACCG GACAGGGCTC CTGCCCTGAT CAAACGCTTC AGCGGGATCG ACTATTACCG CAGCCTGCTT CCCGATCGCG ACCCCAGCCA CGAGATGCGC TGGGCACAGG TCTACACGCA GTTCGAAAGC ACGCAGCTGC GCACGACACT GAGCGTGCCG GTCTACGTCG CGCAACGCTT CCGCGGCGTG GTGGCCGTGG ACCTGGAGAT TCGCCGTCTG CGTGACCTGA TTGGCTTGCC GGAGATCCTG GGGTCTCATC GCTACCTGCT GGACCGTAAT GGCAATGTAA TCGTCTCGAG TCAGACCGGA GGCAAGACCA ATTTGCGCTG GCCTGACGAT TTCGCCGGGG ACCTCCGCAA TACACCCGTG TCGGACCTCA TCTCGCAAGG CACGGGCATG CGGCACGTCA ACGGCCAGTA TGTGTACTTC CAGCGCGTGG GCAATGCCGG CAACTGGCTA ATGGTGGACA CGCTCGACGA ATACGATGTC TATGCGACAG TGGCCCGGCG CCTCAGCTTG CCATTGCTGA CGATCTGGTT CCTGCTGCCT GTGCTGATGT ATGTCACGCT GCGTGTGGTG ACGCTGCTGT TTGACCACTA TCTGGCCGCC GGCAGGAAAC TCCAGCAGAT GGCTGAAACC GATCCCTTGA CGCAACTGGC CAACCGGCGC CGCTTTAGCG AACAGTTCAA AAAGGAAACG GCCCGCCGGC AGCGCGATGG CACGCCGCTG GCCATGCTGA TGCTCGACAT TGACTACTTC AAGCGCGTGA ACGACAAATG GGGCCACGCC AGCGGCGATT GCGTGCTCAT GGCGATGGCG GACCTGATGC GCAAGCACTT GCGCGAGATT GACTTTCCCG CCCGCCTTGG CGGCGAGGAA TTCGCGGTAC TGCTCCCGGG CGCGTCGTCG GATGAAGCCG TGGCGGCGGC CGAGCGCCTG CGCCTGGCCG TGGAAGCCGC GTTCGTCGAG GCGGCACCCG ACGCGCCGCA GCCCGACACG GGCGACGGAC GCATCCGCTT CACCGTGTCT ATTGGTGTTG CAGAAGCCGG GACCGACGGA TGCCAGACAC TCGACGCCAT GCTGGCAGTG GCCGACCGCC GGCTCTATGT CGCCAAGGAA GCGGGGCGTA ATCGGGTATG CGCGACGGAT GCGCCGGTCG GAAGTGCGGC GGTGCCATCG ATGCAGCGAC AAGGCAACTC ATGA
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Protein sequence | MAWHKLLPRP RWLPRAALIY PQRVVVVGFG LAMLLMLVVA MRDLYLLRER VLILHQHDLV LRALGAEAVI NAERFKLSFV RDYAQQLLEL QQGTKASTDG DIERAYAARN EPVWELQVPL GDAPIVGVSP QILKGLQGFE RRDEDLRADL LAARQLSHVL GVSQRSDRPD GTVTFISSNG FYVTYPALPP DRAPALIKRF SGIDYYRSLL PDRDPSHEMR WAQVYTQFES TQLRTTLSVP VYVAQRFRGV VAVDLEIRRL RDLIGLPEIL GSHRYLLDRN GNVIVSSQTG GKTNLRWPDD FAGDLRNTPV SDLISQGTGM RHVNGQYVYF QRVGNAGNWL MVDTLDEYDV YATVARRLSL PLLTIWFLLP VLMYVTLRVV TLLFDHYLAA GRKLQQMAET DPLTQLANRR RFSEQFKKET ARRQRDGTPL AMLMLDIDYF KRVNDKWGHA SGDCVLMAMA DLMRKHLREI DFPARLGGEE FAVLLPGASS DEAVAAAERL RLAVEAAFVE AAPDAPQPDT GDGRIRFTVS IGVAEAGTDG CQTLDAMLAV ADRRLYVAKE AGRNRVCATD APVGSAAVPS MQRQGNS
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