| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_3547 |
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| Symbol | |
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| ID | 4040395 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cupriavidus metallidurans CH34 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007973 |
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| Strand | + |
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| Start bp | 3845944 |
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| End bp | 3847707 |
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| Gene Length | 1764 bp |
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| Protein Length | 587 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 637978964 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_585688 |
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| Protein GI | 94312478 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 29 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCATGGC ACAAACTGCT TCCGCGGCCG CGCTGGCTGC CGCGCGCGGC ACTGATATAT
CCGCAGCGCG TGGTGGTGGT GGGATTTGGC CTGGCGATGC TGCTGATGCT TGTCGTGGCG
ATGCGCGACC TTTACCTGCT GCGCGAGCGC GTCCTGATCC TGCATCAACA CGATCTGGTG
CTGCGCGCAC TTGGCGCGGA AGCGGTTATC AATGCGGAAC GGTTCAAGTT ATCGTTCGTG
CGCGATTACG CGCAGCAGCT TCTCGAACTC CAGCAGGGTA CGAAAGCGTC CACTGACGGC
GATATCGAAC GTGCCTATGC GGCACGCAAT GAACCTGTCT GGGAATTGCA GGTACCACTT
GGCGACGCGC CGATCGTGGG GGTGTCGCCC CAGATCCTGA AAGGACTGCA AGGTTTCGAA
CGCCGCGACG AGGACCTGCG GGCGGATCTG CTGGCCGCGC GTCAGCTCAG CCATGTGCTG
GGTGTCAGCC AGCGCAGCGA CCGTCCCGAT GGCACGGTGA CGTTCATCTC GAGCAACGGC
TTTTACGTGA CATATCCCGC GTTGCCACCG GACAGGGCTC CTGCCCTGAT CAAACGCTTC
AGCGGGATCG ACTATTACCG CAGCCTGCTT CCCGATCGCG ACCCCAGCCA CGAGATGCGC
TGGGCACAGG TCTACACGCA GTTCGAAAGC ACGCAGCTGC GCACGACACT GAGCGTGCCG
GTCTACGTCG CGCAACGCTT CCGCGGCGTG GTGGCCGTGG ACCTGGAGAT TCGCCGTCTG
CGTGACCTGA TTGGCTTGCC GGAGATCCTG GGGTCTCATC GCTACCTGCT GGACCGTAAT
GGCAATGTAA TCGTCTCGAG TCAGACCGGA GGCAAGACCA ATTTGCGCTG GCCTGACGAT
TTCGCCGGGG ACCTCCGCAA TACACCCGTG TCGGACCTCA TCTCGCAAGG CACGGGCATG
CGGCACGTCA ACGGCCAGTA TGTGTACTTC CAGCGCGTGG GCAATGCCGG CAACTGGCTA
ATGGTGGACA CGCTCGACGA ATACGATGTC TATGCGACAG TGGCCCGGCG CCTCAGCTTG
CCATTGCTGA CGATCTGGTT CCTGCTGCCT GTGCTGATGT ATGTCACGCT GCGTGTGGTG
ACGCTGCTGT TTGACCACTA TCTGGCCGCC GGCAGGAAAC TCCAGCAGAT GGCTGAAACC
GATCCCTTGA CGCAACTGGC CAACCGGCGC CGCTTTAGCG AACAGTTCAA AAAGGAAACG
GCCCGCCGGC AGCGCGATGG CACGCCGCTG GCCATGCTGA TGCTCGACAT TGACTACTTC
AAGCGCGTGA ACGACAAATG GGGCCACGCC AGCGGCGATT GCGTGCTCAT GGCGATGGCG
GACCTGATGC GCAAGCACTT GCGCGAGATT GACTTTCCCG CCCGCCTTGG CGGCGAGGAA
TTCGCGGTAC TGCTCCCGGG CGCGTCGTCG GATGAAGCCG TGGCGGCGGC CGAGCGCCTG
CGCCTGGCCG TGGAAGCCGC GTTCGTCGAG GCGGCACCCG ACGCGCCGCA GCCCGACACG
GGCGACGGAC GCATCCGCTT CACCGTGTCT ATTGGTGTTG CAGAAGCCGG GACCGACGGA
TGCCAGACAC TCGACGCCAT GCTGGCAGTG GCCGACCGCC GGCTCTATGT CGCCAAGGAA
GCGGGGCGTA ATCGGGTATG CGCGACGGAT GCGCCGGTCG GAAGTGCGGC GGTGCCATCG
ATGCAGCGAC AAGGCAACTC ATGA
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| Protein sequence | MAWHKLLPRP RWLPRAALIY PQRVVVVGFG LAMLLMLVVA MRDLYLLRER VLILHQHDLV
LRALGAEAVI NAERFKLSFV RDYAQQLLEL QQGTKASTDG DIERAYAARN EPVWELQVPL
GDAPIVGVSP QILKGLQGFE RRDEDLRADL LAARQLSHVL GVSQRSDRPD GTVTFISSNG
FYVTYPALPP DRAPALIKRF SGIDYYRSLL PDRDPSHEMR WAQVYTQFES TQLRTTLSVP
VYVAQRFRGV VAVDLEIRRL RDLIGLPEIL GSHRYLLDRN GNVIVSSQTG GKTNLRWPDD
FAGDLRNTPV SDLISQGTGM RHVNGQYVYF QRVGNAGNWL MVDTLDEYDV YATVARRLSL
PLLTIWFLLP VLMYVTLRVV TLLFDHYLAA GRKLQQMAET DPLTQLANRR RFSEQFKKET
ARRQRDGTPL AMLMLDIDYF KRVNDKWGHA SGDCVLMAMA DLMRKHLREI DFPARLGGEE
FAVLLPGASS DEAVAAAERL RLAVEAAFVE AAPDAPQPDT GDGRIRFTVS IGVAEAGTDG
CQTLDAMLAV ADRRLYVAKE AGRNRVCATD APVGSAAVPS MQRQGNS
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