Gene Rmet_3546 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRmet_3546 
Symbol 
ID4040394 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCupriavidus metallidurans CH34 
KingdomBacteria 
Replicon accessionNC_007973 
Strand
Start bp3844603 
End bp3845799 
Gene Length1197 bp 
Protein Length398 aa 
Translation table11 
GC content68% 
IMG OID637978963 
Productmajor facilitator transporter 
Protein accessionYP_585687 
Protein GI94312477 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2814] Arabinose efflux permease 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones36 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones28 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACATCCG CCACCGCCCA ACGCGCCGAC GCCCCTGCCG CCTGGATCAC TCCCCTCCTG 
GCCACCGCGT GCGGCATGAT CGTCGCCAAC CTCTACTACG CCCAGCCACT GGTTGGTCCG
ATCGCGCGGG CGCTCGAGCT TTCTCCCGAG ATCGCCGGCC TGATCGTCAC GCTGATCCAG
ATCGGCTATT GCGTGGGCCT GCTGCTGCTG GTGCCCTTGG GCGATATCGT CGAGAACCGC
AAGCTTGTAC TGGCGCTGAT CGCCGGCTGT GCGGTGGCAT TGGTCGCGGC AGCGCTGGCT
ACGCACGCGA GCGTCTTCCT GATCGCTGGC TGCGCGATAG GCCTGTGCTC GGTGGCTGTG
CAGGTACTGG TGCCGTTCGC GGCACACCTC GCGCCCGAAC ATGCGCGCGG CCGGGCCGTC
GGCAACGTGA CCAGCGGCCT GCTGATGGGC ATCATGCTGG CGCGCCCGGT ATCGAGCCTG
GTGGCGGACC TGTTCGGCTG GCATACGATC TTCGCCGCGT CGGCCGTGGC CATGGTGCTG
CTTGGCGTGG TGCTGTCGCG CAAGCTGCCG CAGCGCCAGC CGGCGCCCGG CGTGAACTAT
GTCGAGATGC TTGGTTCGAT GGGGCACCTG TTGCGCACGC AGCCGGTGCT GCGGCGGCGC
GCGATGTATC AGGCGAGCAT GTTCGGCGTA TTCAGCCTGT TCTGGACCAC CACGCCGCTG
TACCTGGCCG GGCCCGCTTT CCATATGTCC CAGACCGGCA TCGCCGTGTT CGCGCTCGTG
GGCGTGGCCG GCGCGATTGC CGCGCCGATG GCCGGCCGCT ATGCCGATCG TGGCCACAGC
CGCCAGATGA CTGCCATCGC ACTGGCGCTG GGCGCAGGCT CCTTCCTGCT GAGCCGCATC
GGCGTCGAAG GTTCGCTCAT GTCACTGGCG GCCTTGACCG TCGCGGCCGT CGTGCTCGAC
TTTGCCGTGT CGGCCAACCT GGTGATCGGG CAGCGCGCGA TCTTCTCTTT GTCCGCGGAA
CATCGCAGCC GCCTGAATGG GCTCTACATG GCCATCTTCT TCGTTGGCGG TGCGATCGGC
TCGTCGGTTG GCGCATGGGC CTATGCGCGT GCCGGCTGGC CGCTGGCGAG CTGGATCGGC
TTCGCCTTGC CGGCCATCGC CCTGCTCTAT TTCCGAACCG AGCCTGCAAG CACCTGA
 
Protein sequence
MTSATAQRAD APAAWITPLL ATACGMIVAN LYYAQPLVGP IARALELSPE IAGLIVTLIQ 
IGYCVGLLLL VPLGDIVENR KLVLALIAGC AVALVAAALA THASVFLIAG CAIGLCSVAV
QVLVPFAAHL APEHARGRAV GNVTSGLLMG IMLARPVSSL VADLFGWHTI FAASAVAMVL
LGVVLSRKLP QRQPAPGVNY VEMLGSMGHL LRTQPVLRRR AMYQASMFGV FSLFWTTTPL
YLAGPAFHMS QTGIAVFALV GVAGAIAAPM AGRYADRGHS RQMTAIALAL GAGSFLLSRI
GVEGSLMSLA ALTVAAVVLD FAVSANLVIG QRAIFSLSAE HRSRLNGLYM AIFFVGGAIG
SSVGAWAYAR AGWPLASWIG FALPAIALLY FRTEPAST