| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_3490 |
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| Symbol | |
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| ID | 4040338 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cupriavidus metallidurans CH34 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007973 |
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| Strand | - |
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| Start bp | 3778718 |
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| End bp | 3781012 |
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| Gene Length | 2295 bp |
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| Protein Length | 764 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 637978907 |
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| Product | primosome assembly protein PriA |
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| Protein accession | YP_585631 |
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| Protein GI | 94312421 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1198] Primosomal protein N' (replication factor Y) - superfamily II helicase |
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| TIGRFAM ID | [TIGR00595] primosomal protein N' |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.000105942 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.279843 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACATCGG CGGCGGCGCC TGTGGATACT GCGTTACAGC CCGCATCCGC TGAGGCTGCG
GCGGGCCTCG TGCGCGTCGC ATTGGATACC CCCGCTGACG ACTACTTCGA CTATCTGGCG
GATGCCGCGG TGATGCCGGG CGAGCTCGTG GTCGTGCCAT TTGGCAAGCG CCATGTCATG
GGGGTCGTGC TCGATCGACC CGACAACACC GAGGTACCCG CAGACCGCCT GAGGCCGGTG
ACGGGCCATC TGACGTGGAT GCCACCGCTC AACGCCGCGT GGATCGGCCT TGCCCGTTTT
GCCGCGCGCT ACTACCACCG CTGTCTGGGC GAAGTGATGC TGCCCGCGCT GCCGCCGTCG
CTGCGCGATC CGCAGACGTG GGAACGGCTG GAACAACGCG CCCGAACCAC GCAGTACCGG
GTACGCCCGG CGCAGTCAGA AGCCTTGCTG GCGGCAGCGC CGTCGCGCGC ACGAACCGTG
CGGGCGCTGG CTGAAGCGTT GATTGCGGCG CCTGATGGGT TGCGCCTTGC AGAAGCCCGC
GAGCTTTGCA CGGCGGCCCC GGCACGCCTG GCCGAGTGGG AGGCCGCTGG TTGTATCCAA
AGCACCCATG CAGACCGTCC GCTGCTCGAT AAAGCCCCCA CGCAGGTACC ATCTGTCGCC
CCGACGCTCC ATGACGAGCA GCGTGCGGCC GTGGATGCCA TCACCGCCGC CGAAGGCTAT
GCCGCCTTCC TGCTCCACGG GGTGACCGGC AGCGGCAAGA CGGAAGTCTA TCTCCACGCC
ATCGCCGCGC GATTGGACGA GGACCCAGCC GCCCAGGTAT TGATGCTGGT CCCCGAGATC
AACCTCACGC CCCAACTGCA GGCGCGTATC GCCGAGCGCT TTCCTGACCA GCCACTGGCC
GTCCTGCATA GTGGACTGGC CGATCAGGAG CGCAGCCTCC AGTGGCTGGC AGCGCATCGC
GGCGAGGCGC GTATCGTGCT CGGCACACGC ATGGCCGTCA TGGCATCCGT GCCGAACCTG
AAACTGATCG TGGTCGATGA AGAGCACGAC ACCTCCTACA AGCAGCAGGA AGGCCTGCGG
TACTCGGCAC GCGATCTGGC CGTGTGGCGA GCCAACCAGT TAGGCATCCC GGTAGTGCTT
GGCTCGGCCA CACCGTCCAT GGAGTCCTGG TACCGGGCGG AGCAGGGCGC CTATCGCAAG
CTGGTGCTGC GGGATCGCGC CCAGGCGGAT GCCGCACTGC CCACGGTCAG GCTGATCGAC
CTGAACCATG AACGCCAGCG TCAGCGCACG CTCTATGAAG GGCTGTCGGT GCCGCTGCTC
GATGCCATCC AGCAGCGGCT GGATCGGGGT CAGCAGAGCC TGTTGTTCCT GAACCGGCGG
GGCTACGCGC CAGTCCTGGC CTGCGACAGT TGCGGCTGGC TCTCGGGCTG CCCGCGATGC
TCGGCGTACC TGGTGCTGCA TCGCCCGGAG CGGCGGTTGC GCTGCCACCA TTGCGGGCTT
GAGGCGCCCG TGCCGCATCA TTGCCCCGAC TGCGGCAATG TCGACATCGC ACCGCTTGGC
CGGGGCACGC AGCGGATCGA GGAAGCGCTG GCCGCACGTT TTCCACAGGC ACGCATCGCC
CGGATCGACG CGGATTCCAC GCGGCGCAAG GGCAGTGCGC AGGCCATGCT CGACGAGGTC
CATGCCGGCG AGGTCGACAT CCTGGTGGGC ACGCAGATGG TGGCCAAGGG ACACGACTTC
CAGCGTGTCA CGCTGGTGGG CATCGTCCAC CCTGATGCCG CCATGTTCAG TCACGATTTC
CGCGCGGCCG AGCACCTGTT CGCGTCGCTG ATGCAGGTGT CTGGCCGCGC CGGCAGGGCA
GGGCTGGGCG GCGAAGTGTT GATCCAGACC CGCTATCCAG ATGCCCCCGC ATTGCAGGCT
TTGGTTCGCC ATGACTATGA TGGATTCGCA GCCAGCCAGT TGCGAGAGCG CCGGCAGGCC
GGGTTGCCCC CATATGCCTA CCAGGTGCTG GTGACGGCCG AGCACGCGCA GCTCGAGCGC
GCGCTTGCCT TCCTGCAGGC CGCTCGCGCG TGCGCGGATG CCAGTCCGAT GGCAGCCGAA
GTGCAACTGC ATGACCCGGT GCCGATGTCG ATGGTGCGCC TGTTCAACAA AGAGCGCGCC
CAGATGCTCG TCGAAGCCGG CTCCCGTCCG TTATTGCAAC GGTTTGTCAG TGAGTGGGTA
CGGACTTTCG ATGATGCCGC GACACGTGTC AAAGGGGTGC GTTGGCAATT GGAAATCGAT
CCGCTACGCA TTTGA
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| Protein sequence | MTSAAAPVDT ALQPASAEAA AGLVRVALDT PADDYFDYLA DAAVMPGELV VVPFGKRHVM
GVVLDRPDNT EVPADRLRPV TGHLTWMPPL NAAWIGLARF AARYYHRCLG EVMLPALPPS
LRDPQTWERL EQRARTTQYR VRPAQSEALL AAAPSRARTV RALAEALIAA PDGLRLAEAR
ELCTAAPARL AEWEAAGCIQ STHADRPLLD KAPTQVPSVA PTLHDEQRAA VDAITAAEGY
AAFLLHGVTG SGKTEVYLHA IAARLDEDPA AQVLMLVPEI NLTPQLQARI AERFPDQPLA
VLHSGLADQE RSLQWLAAHR GEARIVLGTR MAVMASVPNL KLIVVDEEHD TSYKQQEGLR
YSARDLAVWR ANQLGIPVVL GSATPSMESW YRAEQGAYRK LVLRDRAQAD AALPTVRLID
LNHERQRQRT LYEGLSVPLL DAIQQRLDRG QQSLLFLNRR GYAPVLACDS CGWLSGCPRC
SAYLVLHRPE RRLRCHHCGL EAPVPHHCPD CGNVDIAPLG RGTQRIEEAL AARFPQARIA
RIDADSTRRK GSAQAMLDEV HAGEVDILVG TQMVAKGHDF QRVTLVGIVH PDAAMFSHDF
RAAEHLFASL MQVSGRAGRA GLGGEVLIQT RYPDAPALQA LVRHDYDGFA ASQLRERRQA
GLPPYAYQVL VTAEHAQLER ALAFLQAARA CADASPMAAE VQLHDPVPMS MVRLFNKERA
QMLVEAGSRP LLQRFVSEWV RTFDDAATRV KGVRWQLEID PLRI
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