Gene Rmet_3489 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRmet_3489 
SymbolputA 
ID4040337 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCupriavidus metallidurans CH34 
KingdomBacteria 
Replicon accessionNC_007973 
Strand
Start bp3774558 
End bp3778520 
Gene Length3963 bp 
Protein Length1320 aa 
Translation table11 
GC content67% 
IMG OID637978906 
Producttrifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase 
Protein accessionYP_585630 
Protein GI94312420 
COG category[C] Energy production and conversion
[E] Amino acid transport and metabolism 
COG ID[COG0506] Proline dehydrogenase
[COG4230] Delta 1-pyrroline-5-carboxylate dehydrogenase 
TIGRFAM ID[TIGR01238] delta-1-pyrroline-5-carboxylate dehydrogenase (PutA C-terminal domain) 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.376631 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value0.245835 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCCACCA CCACCCTCGG CGTCAAGCTC GACGACGCAT CGCGCGAACG CCTGAAGCGC 
GTTGCCCAGT CCATCGACCG CACCCCGCAC TGGCTGATCA AGCAGGCCAT CTTCACGTAC
CTGGAACAGG TGGAACGCGG CCATCTGCCC CATGAAGCTG GTGCCGGCGC GACTGCAGAT
ACCGATGGCG CCGATGCTGG CGACGCGACG CAGGCCGATG CCGCGCCGCA ACCTTTCCTC
GAATTCGCGC AGAGCGTCCA GCCTCAGTCG GTACTGCGCG CGGCCATCAC GTCCGCCTAC
CGCCGTCCGG AAACCGAATG TGTGCCGGTG CTGCTGGAGC AGGCGCGCCT GCCGCAGGCG
CAGGCCGATG CCGCCATCAA GATGGCGCGA GCCCTGGCGG CCCGGCTGCG TGAGCAGAAA
GTAGGCAGCG GACGCGAGGG GCTGGTGCAG GGGCTGATCC AGGAGTTCTC GTTGTCGTCG
CAGGAAGGCG TGGCGCTGAT GTGCCTGGCC GAAGCGCTGC TGCGCATCCC CGACAAGGCC
ACGCGCGATG CGCTGATCCG CGACAAGATC AGCGGCGCCA ACTGGCAATC ACATCTGGGC
CAGAGCCCGT CGCTGTTCGT CAACGCTGCC ACCTGGGGCC TGCTGCTGAC CGGCCGGCTG
GTGGCCACGC ACACCGAAGC CGGACTGTCG AAGGCGCTGA CGCGCATCAT CGGCAAGGGC
GGCGAGCCGT TGATCCGCAA GGGCGTGGAC ATGGCGATGC GCCTGATGGG CGAGCAGTTC
GTGACTGGCG AAACAATCTC CGAGGCGCTG GCCAACGCGC GCAAGTACGA GGAAGAGGGC
TTCCGTTACT CGTATGACAT GCTCGGCGAA GCGGCGATGA CCGAGGCCGA TGCCCAGCGC
TACCTGGCGT CCTACGAGCA GGCGATCCAC GCGATCGGGC AGGCTTCGCG CGGCCGTGGC
ATCTACGAAG GCCCAGGCAT CTCGATCAAG CTATCCGCGC TGCACCCGCG CTACAGCCGC
GCGCAGCACG AGCGCGTGAT CACCGAACTC TACGGTCGCC TGAAGAGCCT GACGATGCTG
GCCCGCCAGT ACGACATCGG TATCAACATC GACGCCGAGG AAGCGGACCG CCTGGAAATC
TCGCTCGACC TGCTTGAGCG GCTCTGCTTC GAGCCGGAGC TGGCCGGTTG GAACGGCATC
GGCTTCGTGG TGCAGGGCTA TCAGAAGCGC TGCCCGTTCG TGATCGATTA TCTGATCGAC
CTGGCGCGCC GTAGCCGGCA TCGCCTGATG ATCCGCCTGG TCAAGGGTGC GTACTGGGAC
AGCGAGATCA AGCGCGCCCA GGTCGACGGC CTGGAGGGCT ACCCGGTCTA CACGCGCAAG
GTCTACACCG ATGTGTCGTA TGTGGCCTGC GCCCGCAAGC TGCTGTCGGT GCCCGACGCG
ATTTATCCAC AGTTCGCCAC CCACAACGCC CACACGCTGG CAGCCATCTA CCAGATCGCC
GGCCAGAACT ATTACCCCGG CCAGTACGAA TTCCAGTGCC TGCATGGCAT GGGCGAGCCG
CTGTACGACC AGGTGGTCGG CCCGGTGGCG GATGGCAAAT TCAACCGGCC GTGCCGGATC
TACGCGCCGG TCGGCACCCA CGAAACGCTG CTGGCATACC TGGTGCGCCG CCTGCTCGAG
AACGGCGCCA ACACCTCGTT CGTGAACCGG ATCGCCGACG AGACGATCGC GCTCGACGAT
CTCGTCGCTG ACCCGGTGGC CGTGGTCGAA ACCATGCACA AGACAGAGGG CGTGCTTGGC
CTGCCGCATC CGCGTATCCC GCAGCCGCGC GCGCTGTATG GCAAATCGCG CGCCAATTCG
GCCGGCATCG ACCTGTCGAA TGAACATCGG TTGGCGTCGC TGTCGTCCGC ACTGCTGGCC
GGCACCAGCG AGACGCCGCG CGCGGAACCG CTGCTCGGCG CCGCAGTGGC GGGCACGGAT
GCCACGTCCG AGCCGGTACT GAATCCGGCG GATCGTCGCG ACGTAGTGGG GCAGGTCAGC
GAGGCAACGC CGGCTGAGAC CGAAGCCGCG CTTGTGGCCG CCGTCAACGT GGCGCCGATC
TGGCAGGCCA CGCCGCCCGA AGTGCGTGCC GCCGCGCTGG AACGCGCCGC CGATCTGATG
GAAGCCCAGA TGCAGTCGCT GATGGGCATC ATCATGCGCG AGGCCGGCAA GACGTTTTCG
AACGCCATCG CCGAAGTGCG CGAGGCGGTC GACTTCCTGC GCTACTACGC GGTGCAGGTC
CGCGCGTCGT TCTCGAACGA TACCCATCGC CCCCTTGGTC CGGTGGTCTG CATCAGCCCG
TGGAATTTCC CGCTGGCGAT CTTCACCGGC CAGGTGGCCG CCGCGCTGGC AGCCGGGAAT
CCGGTGCTGG CCAAGCCGGC CGAACAGACG CCGCTGATCG CCGCCGCCGC CGTGCGTCTG
CTGCGCGACG CCGGTGTGCC CGCAGCCGCG GTGCAATTGC TGCCGGGCCG GGGCGAGACC
GTCGGCGCGG CGCTGGTAGG CGACGCCCGG GTCAAGGGCG TGATGTTCAC CGGCTCGACC
GAAGTTGCCC GCCTCCTGCA ACGCAACGTG GCGAGCCGTC TCGATGCCGC GGGCCGTCCG
ATTCCGCTGA TCGCCGAGAC GGGCGGGCAG AACGCGATGA TCGTCGATTC CTCGGCGCTG
GCCGAGCAGG TGGTGGGCGA CGTGGTGACT TCGGCCTTCG ATTCGGCCGG CCAGCGCTGT
TCGGCGCTGC GCGTGCTGTG CCTGCAGGAA GACGTGGCCG ACCGCATCCT GGAAATGCTC
AAGGGTGCGA TGGGTGAGTT GACGCTGGGC AACCCGGATC GCCTCTCCAC TGACGTTGGT
CCTGTGATCG ACGAGGAAGC GCGCGGCAAT ATCCTGCGCC ATATCGAAGC GATGCGGGCC
AAGGGCCGTC GTGTGCACCA GGCCGACCCG GGCGCGGCGG ACACGCCGGC CTGCCGCCAT
GGCACGTTCG TGCCGCCGAC GCTGATCGAA CTCGATTCGA TCGCGGAGCT GAAGCGGGAG
GTGTTCGGTC CGGTGTTGCA TGTGGTGCGC TTCCCGCGAA CCGCGCTGGA CAAGCTGATC
GACCAGATCA ATGGCACTGG GTATGGCCTG ACGCTCGGCG TCCACACGCG GATCGACGAG
ACGATCGCGC ACATCGTCGA CCGCGCGGAT GTGGGCAATC TCTATGTGAA CCGGAATGTC
GTCGGCGCCG TGGTGGGCGT GCAGCCATTC GGTGGCGAAG GGCTGTCCGG CACGGGGCCG
AAGGCGGGAG GGCCACTCTA TCTGCACCGG CTGCTGTCGG TCTGCCCGCA GGATGCCGTG
GCGCGCGCCG TGCGTGCGTC GGATGCGACT GGTGGCGTGG CCGCCGCGCC GGTGTCGCCC
GAACTGGCCG CGCTGAAGGC CTGGGCGCAG GCGTCGCTGC CCGAGGTGGC CGAGGCCTGC
GATCGCCTGG CCGCGGCATC GCCGTCGGGG CTCGGTGTGA CGCTGCCGGG TCCTACCGGC
GAGCGCAACA CCTACTCGCT GCTGCCGCGC GAGCGTGTGC TTTGCCTCGC CCAGCAGGAG
TCCGATCTGG TGCTGCAACT GGCCGCCGTG CTGGCCGTCG GCAGCGAGGC GTTGTGCGTT
GACACAGCGC AGACCAGGGC CCTGTCTGAA AGGCTTCCCG CCGCAGTACA ATCGCGCGTC
CGCATGGTTT CCGACTGGAC GTCGACGGAT ACGGCATTCG ATGCCGTGCT GCACCACGGC
GATTCCGACC AGCTTCGCAC GGTTTGCGAG CAGGTGGCCA CCCGCACTGG TCCGATCGTC
GGCGTGCAGG GCCTTGCGCA CGGTGAACCG AATATCGCTC TGGAGCGTTT GTTGATCGAA
CGTTCGCTGT CCGTCAATAC GGCGGCCGCG GGCGGCAATG CAAGTTTGAT GACGATCGGC
TGA
 
Protein sequence
MATTTLGVKL DDASRERLKR VAQSIDRTPH WLIKQAIFTY LEQVERGHLP HEAGAGATAD 
TDGADAGDAT QADAAPQPFL EFAQSVQPQS VLRAAITSAY RRPETECVPV LLEQARLPQA
QADAAIKMAR ALAARLREQK VGSGREGLVQ GLIQEFSLSS QEGVALMCLA EALLRIPDKA
TRDALIRDKI SGANWQSHLG QSPSLFVNAA TWGLLLTGRL VATHTEAGLS KALTRIIGKG
GEPLIRKGVD MAMRLMGEQF VTGETISEAL ANARKYEEEG FRYSYDMLGE AAMTEADAQR
YLASYEQAIH AIGQASRGRG IYEGPGISIK LSALHPRYSR AQHERVITEL YGRLKSLTML
ARQYDIGINI DAEEADRLEI SLDLLERLCF EPELAGWNGI GFVVQGYQKR CPFVIDYLID
LARRSRHRLM IRLVKGAYWD SEIKRAQVDG LEGYPVYTRK VYTDVSYVAC ARKLLSVPDA
IYPQFATHNA HTLAAIYQIA GQNYYPGQYE FQCLHGMGEP LYDQVVGPVA DGKFNRPCRI
YAPVGTHETL LAYLVRRLLE NGANTSFVNR IADETIALDD LVADPVAVVE TMHKTEGVLG
LPHPRIPQPR ALYGKSRANS AGIDLSNEHR LASLSSALLA GTSETPRAEP LLGAAVAGTD
ATSEPVLNPA DRRDVVGQVS EATPAETEAA LVAAVNVAPI WQATPPEVRA AALERAADLM
EAQMQSLMGI IMREAGKTFS NAIAEVREAV DFLRYYAVQV RASFSNDTHR PLGPVVCISP
WNFPLAIFTG QVAAALAAGN PVLAKPAEQT PLIAAAAVRL LRDAGVPAAA VQLLPGRGET
VGAALVGDAR VKGVMFTGST EVARLLQRNV ASRLDAAGRP IPLIAETGGQ NAMIVDSSAL
AEQVVGDVVT SAFDSAGQRC SALRVLCLQE DVADRILEML KGAMGELTLG NPDRLSTDVG
PVIDEEARGN ILRHIEAMRA KGRRVHQADP GAADTPACRH GTFVPPTLIE LDSIAELKRE
VFGPVLHVVR FPRTALDKLI DQINGTGYGL TLGVHTRIDE TIAHIVDRAD VGNLYVNRNV
VGAVVGVQPF GGEGLSGTGP KAGGPLYLHR LLSVCPQDAV ARAVRASDAT GGVAAAPVSP
ELAALKAWAQ ASLPEVAEAC DRLAAASPSG LGVTLPGPTG ERNTYSLLPR ERVLCLAQQE
SDLVLQLAAV LAVGSEALCV DTAQTRALSE RLPAAVQSRV RMVSDWTSTD TAFDAVLHHG
DSDQLRTVCE QVATRTGPIV GVQGLAHGEP NIALERLLIE RSLSVNTAAA GGNASLMTIG