Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rmet_3392 |
Symbol | |
ID | 4040236 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Cupriavidus metallidurans CH34 |
Kingdom | Bacteria |
Replicon accession | NC_007973 |
Strand | + |
Start bp | 3665370 |
End bp | 3667721 |
Gene Length | 2352 bp |
Protein Length | 783 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 637978807 |
Product | type II and III secretion system protein |
Protein accession | YP_585533 |
Protein GI | 94312323 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1450] Type II secretory pathway, component PulD |
TIGRFAM ID | [TIGR02517] general secretion pathway protein D |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.0849213 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 25 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATGAAAA CCCGAGCCAA CCAACCCGTC TTTCGTACCG CCTGCGCCCG CGCCGTCGTC CTGCTGTGCG GCCTGTCGCT GCTGGCGCCC GCCCCGCTCT GGGCCCAGCC ATCCCAGCAG CCACCGCAAC CGAACGACAT CGGCTCGCGC AGCAATCGCG ACCAGGTGGT GCTGAACTTC GTCAACGCCG ATCTGGAGTC GGTGGTGAAG GCGGTCGGTC AGGCCACCGG CAAGAACTTC GTGATCGATC CGCGCGTGAA GGGCACCGTG AATCTGGTCA CGGAGCAGCC GGTCTCGCGC GCGCAGGCGC TGGAAACGCT CGGTTCCGTG CTGCGGATGC AGGGTTACGC GATGGTCCAG TCCAACGGCT TCACCAAGGT CGTACCCGAA GCCGATGCCA AACTGCAGGG CTCGCCCACG GTTGTCGGTC CCAGCAGCAA TCGCGGCGAC CAGGTGGTGA CGCAGGTCTT CCGCCTGAAC TACGAATCGG CCAACAACCT GGTGCCAGTG CTGCGGCCGA TGATCGCGCC GAACAACACG ATCACCGCTT ACCCGGCCAA CAACACGCTG GTCATCACCG ACTACGCGGA CAATCTGCGC CGTCTGGCAC GGATCATCGC CGCGGTGGAT GCGCCCGCGT CCGGCGAAGT GGAGCTGATT CCGCTCAAGA ACGCGATCGC CAGCGATGCA GCAGTGGTCC TGCAGAAACT GCTCGACCCG ACCGCCGCCG CAGGTGGAGC CGGCGCTGGC GACGCGAGCC TGCGCACGAC CGTCGTGGCG GAACCGCGCA GCAACTCGCT GATGATCCGC GCCTCCAGCC GCGCACGCGT GCAGCAGGCA CGCCAGCTCA TCGAGAAGAT CGACCAGCCG TTCGCGCGCC CTGGCAACAT CTGGGTGGTG CCGCTCAGGA ATGCCGACGC CGTGAAGCTC GCGGCCACGC TGCGGGCCAT CGTTGCGGCA GACAGCAGTT TCTCCAGCTC GACGCAACCC GGCGGCGGCG CGACGGGCGG CGCCGCAATG CAATCCACCT CATTGCCGCA AGGCGGCCAG TACACCGGCG GCAATACCGG CAACTACAAC CGCAGCGGCT CCGGCGGCGG CTTCGGCAGC GGCGGCAGCA ACGCGTTCTC CGCATCGTTC GCGGTCAACC AGCAGCCAAC CACGGGCGGC ATCGTCCAGG CCGACCCGTC GACGAACTCG CTGATCATTA CCGCCAGCGA GCCGGTGTAC CGCAATCTGC GCGGCGTGAT CGACGACCTC GACGCGCGGC GCGCGCAGGT CTACATCGAA TCGATGATCG TGGAGGTCAG CGGCACGCTG GACAGCCAGC TTGGCATCCA GTGGCAAGGG CTGATCAATT CGGGCGGCAA CACCGTCGGC TTCGCGGGGA CCAACTTCGG TACCGGCGGC CAGAACATCA TCAACCTGAC TGCGGCGGCC GCGCTCTACA ACCAGAACAA GACCGCCGGC CTGGCGGCCA TCAGTGGCCT CGTGCCCGAT GTGGGCGGCC TGAATCTTGG GGTGATCAAC AAGGCCATCG GCCTGGGCGC GCTGCTCCAC GCGCTGGGAC AGAACACCAG CGTGAACCTG CTGTCCACGC CGAACCTGAT CACACTCGAG AACGAGGAAG CGAAGATCCT CATCGGCCAG AACATTCCGA TCACCACGGG ATCGTACGCA CAGACTGGCA GTTCGACCTC GGTGACGCCG TTCCAGACGT TCGACCGCAA GGATGTCGGC ATCACGCTGC GCGTGCGCCC ACAGATTTCC GAAGGCGGCT TGGTCAAGAT GCAGATCTAC CAGGAGTCTT CGCAAGTGGC GCCCGGCACG CTCACCAACC CGCAGGGCCC CACCACGAAC GTGCGATCGA TCGAAACCAA TGTGCTCGTG GACGATGGCC AGATCATCGT GCTGGGCGGC CTGATCGAGG ACAACTACGG CGACAACGTC CAGAAAGTGC CGCTGCTCGG AGACATCCCC TACCTCGGCT CGTTGTTCCG CTACGAGAAC AAGACCCGCT CGAAGACCAA TCTGCTGGTG TTCCTGCGCC CCTACGTGAT GCGCACCACC ACCGCCACGG ATCGTCTGAC GCAGGATCGC TACGACTTCA TCCGCGGCCA GCAGCAGAAC TTCGTCTCGC CGAACATGGT GGTCCGCGAG CTGAACACAC CCGTGCTGCC GCCGGCCGAT GCGCCGACCG CGCCGTTCGT CGACCCGCGC TACAACGGTC CGGTGCCCGG CCCGGTGCCC CTTGCGCCGG GACAACCGTC CACGTCCGCA CCCGCGCCAC AGACCGTGCC GCAGCCGGTA CAGCGGCCGC TCTCGCAGAC CACTTCCGGC CAGGGCGCGT AA
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Protein sequence | MMKTRANQPV FRTACARAVV LLCGLSLLAP APLWAQPSQQ PPQPNDIGSR SNRDQVVLNF VNADLESVVK AVGQATGKNF VIDPRVKGTV NLVTEQPVSR AQALETLGSV LRMQGYAMVQ SNGFTKVVPE ADAKLQGSPT VVGPSSNRGD QVVTQVFRLN YESANNLVPV LRPMIAPNNT ITAYPANNTL VITDYADNLR RLARIIAAVD APASGEVELI PLKNAIASDA AVVLQKLLDP TAAAGGAGAG DASLRTTVVA EPRSNSLMIR ASSRARVQQA RQLIEKIDQP FARPGNIWVV PLRNADAVKL AATLRAIVAA DSSFSSSTQP GGGATGGAAM QSTSLPQGGQ YTGGNTGNYN RSGSGGGFGS GGSNAFSASF AVNQQPTTGG IVQADPSTNS LIITASEPVY RNLRGVIDDL DARRAQVYIE SMIVEVSGTL DSQLGIQWQG LINSGGNTVG FAGTNFGTGG QNIINLTAAA ALYNQNKTAG LAAISGLVPD VGGLNLGVIN KAIGLGALLH ALGQNTSVNL LSTPNLITLE NEEAKILIGQ NIPITTGSYA QTGSSTSVTP FQTFDRKDVG ITLRVRPQIS EGGLVKMQIY QESSQVAPGT LTNPQGPTTN VRSIETNVLV DDGQIIVLGG LIEDNYGDNV QKVPLLGDIP YLGSLFRYEN KTRSKTNLLV FLRPYVMRTT TATDRLTQDR YDFIRGQQQN FVSPNMVVRE LNTPVLPPAD APTAPFVDPR YNGPVPGPVP LAPGQPSTSA PAPQTVPQPV QRPLSQTTSG QGA
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