| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_3334 |
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| Symbol | rpoB |
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| ID | 4040169 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cupriavidus metallidurans CH34 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007973 |
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| Strand | - |
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| Start bp | 3602576 |
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| End bp | 3606682 |
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| Gene Length | 4107 bp |
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| Protein Length | 1368 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 637978740 |
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| Product | DNA-directed RNA polymerase subunit beta |
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| Protein accession | YP_585475 |
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| Protein GI | 94312265 |
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| COG category | [K] Transcription |
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| COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
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| TIGRFAM ID | [TIGR02013] DNA-directed RNA polymerase, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.11598 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 33 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGTACA GCTTCACCGA AAAGAAGCGC ATTCGCAAAT CCTTTGCGAA GCGTGCGACG
GTTCATCAGG TTCCATTCCT GCTTGCCACA CAGATTGAAT CCTACACCCA GTTTTTGCAA
GCGGAAACGC CGCCCGCGCG TCGCAAGAGC GAGGGTCTGC AGGCCGCTTT CAACGCGATT
TTCCCCATCT CCTCCCATAA CGGGCTTGCC CGTATGGAGT TTGTCTCGTA TCACCTGTCC
AACCCGCCGT TCGACGTCAA GGAATGCCAG CAGCGTGGCC TGACGTTCCA CTCGGCGCTG
CGCGCAAAGG TTCGCCTGAT CATCAATGAT CGCGAGAACC CGGGCAAGGT GAAGGAAGTG
AAGGAACAGG AAGTCTACAT GGGCGAAATT CCGCTCATGA CTTCGACGGG CTCCTTCGTC
ATCAACGGCA CCGAGCGTGT CATCGTCAGC CAGCTGCACC GCTCGCCGGG CGTGTTCTTC
GAGCACGACA AGGGCAAGAC GCACAGCTCG GGCAAGCTGT TGTTCTCGGC ACGGATTATT
CCGTACCGTG GCTCGTGGCT CGACTTTGAA TTCGATCCGA AGGACATCCT GTACTTCCGC
GTCGACCGCC GCCGCAAGAT GCCGGTGACG ATCCTGCTGA AGTCGATCGG CCTGACGCCG
GAACAGATCC TGGCGCACTT CTTCGTGTTC GACAATTTCA CGCTGCAGAG CGAAGGCGCG
CAACTCGAGT TCGTGCCCGA GCGTCTGCGC GGCGAAGTCG CGCGCTTCGA CATCGTAGAC
AAGAACGGTC GCGTGGTCGT CGAGAAGGAC AAGCGGATCA ACGCCAAGCA CATCCGTGAT
CTGGACTCCG CCGGCACCAA GCTGATCAGC GTGCCGGAAG ACTACCTGCT GGGTCGCGTC
CTGGCCAAGA ACATCATTGA TCCGGACACC GGTGAAGTGA TCGCCAACGC CAACGACGAA
CTGACTGAGA CGCTGCTGGA AAACCTGCGA GAAGCCGGCG TCAAGGACAT CCAGACGCTG
TACACGAACG ACCTGGACCA GGGTCCGTAC ATCTCGCAAA CGCTGCGTGC GGACGACACC
GCGGACCAGA CGGCCGCGCG TATCGCCATC TACCGCATGA TGCGCCCGGG CGAGCCGCCC
ACCGAAGACG CCGTGGAAGC GCTGTTCCAG CGCCTGTTCT ACAGCGAGGA ATCGTACGAT
CTGTCGCGCG TTGGCCGCAT GAAGGTCAAC AGCCGTCTGT CGCGCCCGAG CGGCGAAGGC
AGCATGGTGC TGCAGGACGA GGACATCCTC GAGACGATCA AGATCCTGGT GAATCTGCGT
AACGGCAAGG GTGAAGTCGA TGATATCGAC CACCTGGGCA ACCGTCGTGT GCGTTGCGTC
GGCGAACTGG CAGAGAACCA GTTCCGTGCC GGCCTGTCGC GCGTGGAGCG CGCCGTCAAG
GAGCGTCTGG GCCAGGCCGA GACCGAGAAC CTGATGCCGC ACGACCTGAT CAACTCGAAG
CCGATCTCGT CGGCGATTCG CGAGTTCTTC GGTTCGTCGC AGCTGTCGCA GTTCATGGAC
CAGACCAACC CGCTGTCGGA AATCACCCAC AAGCGCCGTG TTTCGGCTCT TGGCCCGGGC
GGTCTGACGC GCGAGCGCGC CGGCTTTGAA GTCCGAGACG TGCACCCGAC CCACTATGGT
CGCGTGTGCC CGATCGAAAC GCCGGAAGGC CCGAACATTG GTCTGATCAA CTCGCTGGCA
CTGTACGCCC GCCTGAACGA GTACGGCTTC CTGGAAACGC CGTACCGCAA GGTGGAAAAC
AGCAAGCTGA CCGACCAGGT GGATTACCTG TCGGCCATCG AGGAAGGCAA GTACGTGGTG
GCGCAGGCCA ACGCGACCGT TGACGCCGAA GGCAACCTCA TCGACGAACT GGTGTCGGCG
CGTGAAGGTT CCGAACGTGA AACGCGTATG GTCACGCCGG ACCGCGTCCA GTACATCGAC
GTGGCGCCGT CGCAGATCGT GTCGGCCGCT GCATCGCTGG TGCCGTTCCT GGAACACGAT
GACGCGAACC GTGCACTGAT GGGCGCGAAC ATGCAGCGTC AGGCCGTGCC TTGCCTGCGT
CCGGACAAGC CGCTGGTTGG TACCGGCATC GAGCGTACCG TGGCCGTTGA CTCGGGCACG
GCCGTTCAGG CAACGCGTGG TGGCGTGGTG GATTACGTCG ATGCAATGCG TGTGGTGATC
CGCGTGAACG ACGACGAAGC CGTAGCCGGT GAAGTCGGCG TGGACATCTA CAACCTGATC
AAGTACACGC GTTCGAACCA GAACACCAAC ATCAACCAGC GTCCGATGGT GAAGGTTGGC
GATATCGTTG CCCGTGGCGA CGTGATCGCC GACGGCGCAT CGACCGACCT GGGCGAACTG
GCGCTGGGCC AGAACATGCT GGTCGCGTTC ATGCCGTGGA ACGGCTACAA CTTCGAGGAT
TCGATCCTGA TCTCGGAGCG TGTGGTTGCC GAAGACCGCT ATACCTCGAT TCACATCGAG
GAACTGTCGG TCGTCGCCCG CGACACGAAG CTCGGACCTG AAGAAATCAC GCGCGACATC
TCGAACCTGG CCGAAGCGCA ACTGGCGCGT CTGGACGAGT CTGGCATCAC GTACATCGGC
GCGGAAGTCG AAGCCGGCGA CGTGCTGGTG GGCAAGGTCA CGCCGAAGGG CGAAACCCAG
CTCACGCCGG AAGAGAAGCT GCTGCGCGCG ATCTTCGGCG AGAAGGCTTC GGACGTGAAG
GACACGTCGC TGCGCGTGCC GTCGGGCATG AGCGGTATCG TGATCGACGT GCAGGTCTTC
ACGCGTGAAG GCGTGACGCG CGACAAGCGC GCCCAGTCGA TCATCGACGA CGAACTGAAG
CGCTACCGTC TGGACCTGAA CGACCAGCTC CGTATCGTGG AAGGCGACGC GTTCCAGCGT
CTGGAGCGCA TGCTGCTCGA CAAGACCGTC AACGGCGGTC CGAAGAAGCT GGCGAAGGGT
GCCAAGCTGA CCCGCGAGTA CCTGGCCGAC CTGGACAAGT ACCACTGGTT CGACATCCGT
CCGGCCGACG AGGAAGTGGC TGCCCAGCTC GAAGCGGTGA AGGAAGCCAT CGAGCAAAAG
CGTCACGAGT TCGACCTGGC CTTCGAAGAG AAGCGCAAGA AGCTGACGCA GGGCGACGAA
CTGCCGCCGG GCGTGATCAA GATGGTCAAG GTGTACCTGG CCGTCAAGCG TCGCCTGCAG
CCTGGCGACA AGATGGCAGG CCGTCACGGT AACAAGGGTG TCGTGTCGAA GATCGTTCCG
ATCGAAGACA TGCCGTACAT GGCCGACGGT ACGCCGGCGG ACATCGTGCT GAACCCGCTG
GGCGTGCCTT CGCGGATGAA CGTGGGTCAG ATTCTGGAAA CCCACCTGGG CTGGGCCGCT
CGCGGTCTGG GCCAGCGTAT CGGCGACATG CTCAAGGCTT CGGCCAAGGC GCAGGAACTC
CGTCCGCTGC TCGCGCAGAT CTACAACGAG AGTGGCAAGG CCGAAGACCT GGATAGCCTG
AGCGACGCTG AAGTGCTGGA ACTGGCGGGC AACCTGAAGA AGGGTGTTCC GTTCGCCACG
CCGGTGTTCG ATGGCGCGCA CGAAGCGGAA ATCCGCCGGA TGCTCGACCT GGCCTACCCG
GACGATATCG CGAAGGAACG CGGCCTGACG GCATCGAAGC AGCAGGTCAC GCTGCACGAT
GGCCGTACCG GCGAAGCGTT CGAGCGTCCG GTCACGCTGG GTGTGATGCA CATGCTGAAG
CTGCACCACT TGGTCGACGA CAAGATGCAC GCCCGTTCCA CCGGCCCGTA CTCGCTGGTG
ACGCAGCAGC CGCTGGGCGG TAAGGCCCAG TTCGGTGGCC AGCGTTTCGG TGAGATGGAA
GTGTGGGCAC TGGAAGCCTA CGGCGCATCG TACGTGCTGC AGGAAATGCT GACGGTTAAG
TCTGATGACG TGAACGGCCG TACGAAGGTG TACGAGAACA TCGTCAAGGG CGAGCACTCG
ATCGACGCCG GCATGCCGGA ATCGTTCAAC GTGCTGGTGA AGGAAATCCG CTCGCTGGGT
ATCGACATCG ACCTGGATCG CTACTGA
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| Protein sequence | MAYSFTEKKR IRKSFAKRAT VHQVPFLLAT QIESYTQFLQ AETPPARRKS EGLQAAFNAI
FPISSHNGLA RMEFVSYHLS NPPFDVKECQ QRGLTFHSAL RAKVRLIIND RENPGKVKEV
KEQEVYMGEI PLMTSTGSFV INGTERVIVS QLHRSPGVFF EHDKGKTHSS GKLLFSARII
PYRGSWLDFE FDPKDILYFR VDRRRKMPVT ILLKSIGLTP EQILAHFFVF DNFTLQSEGA
QLEFVPERLR GEVARFDIVD KNGRVVVEKD KRINAKHIRD LDSAGTKLIS VPEDYLLGRV
LAKNIIDPDT GEVIANANDE LTETLLENLR EAGVKDIQTL YTNDLDQGPY ISQTLRADDT
ADQTAARIAI YRMMRPGEPP TEDAVEALFQ RLFYSEESYD LSRVGRMKVN SRLSRPSGEG
SMVLQDEDIL ETIKILVNLR NGKGEVDDID HLGNRRVRCV GELAENQFRA GLSRVERAVK
ERLGQAETEN LMPHDLINSK PISSAIREFF GSSQLSQFMD QTNPLSEITH KRRVSALGPG
GLTRERAGFE VRDVHPTHYG RVCPIETPEG PNIGLINSLA LYARLNEYGF LETPYRKVEN
SKLTDQVDYL SAIEEGKYVV AQANATVDAE GNLIDELVSA REGSERETRM VTPDRVQYID
VAPSQIVSAA ASLVPFLEHD DANRALMGAN MQRQAVPCLR PDKPLVGTGI ERTVAVDSGT
AVQATRGGVV DYVDAMRVVI RVNDDEAVAG EVGVDIYNLI KYTRSNQNTN INQRPMVKVG
DIVARGDVIA DGASTDLGEL ALGQNMLVAF MPWNGYNFED SILISERVVA EDRYTSIHIE
ELSVVARDTK LGPEEITRDI SNLAEAQLAR LDESGITYIG AEVEAGDVLV GKVTPKGETQ
LTPEEKLLRA IFGEKASDVK DTSLRVPSGM SGIVIDVQVF TREGVTRDKR AQSIIDDELK
RYRLDLNDQL RIVEGDAFQR LERMLLDKTV NGGPKKLAKG AKLTREYLAD LDKYHWFDIR
PADEEVAAQL EAVKEAIEQK RHEFDLAFEE KRKKLTQGDE LPPGVIKMVK VYLAVKRRLQ
PGDKMAGRHG NKGVVSKIVP IEDMPYMADG TPADIVLNPL GVPSRMNVGQ ILETHLGWAA
RGLGQRIGDM LKASAKAQEL RPLLAQIYNE SGKAEDLDSL SDAEVLELAG NLKKGVPFAT
PVFDGAHEAE IRRMLDLAYP DDIAKERGLT ASKQQVTLHD GRTGEAFERP VTLGVMHMLK
LHHLVDDKMH ARSTGPYSLV TQQPLGGKAQ FGGQRFGEME VWALEAYGAS YVLQEMLTVK
SDDVNGRTKV YENIVKGEHS IDAGMPESFN VLVKEIRSLG IDIDLDRY
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