| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_3333 |
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| Symbol | |
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| ID | 4040168 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cupriavidus metallidurans CH34 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007973 |
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| Strand | - |
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| Start bp | 3598219 |
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| End bp | 3602460 |
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| Gene Length | 4242 bp |
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| Protein Length | 1413 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 637978739 |
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| Product | DNA-directed RNA polymerase subunit beta' |
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| Protein accession | YP_585474 |
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| Protein GI | 94312264 |
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| COG category | [K] Transcription |
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| COG ID | [COG0086] DNA-directed RNA polymerase, beta' subunit/160 kD subunit |
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| TIGRFAM ID | [TIGR02386] DNA-directed RNA polymerase, beta' subunit, predominant form |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.762028 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 36 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAGCAT TGCTCGATCT CTTTAAGCAG GTTCAGCAGG AAGAGCAGTT CGACGCGATC
AAGATCGGCT TGGCCTCGCC CGAGAAGATC CGTTCGTGGT CGTACGGTGA AGTGAAGAAG
CCGGAGACGA TCAACTACCG TACGTTCAAG CCGGAACGCG ACGGCCTGTT CTGCGCCAAG
ATCTTTGGCC CGATCAAGGA CTACGAGTGC CTGTGCGGCA AGTACAAGCG CCTGAAGCAC
CGTGGCGTGA TCTGCGAGAA GTGCGGCGTG GAAGTGACGC TGGCCAAGGT GCGCCGCGAG
CGCATGGGCC ACATCGAACT GGCTGCTCCG ACCGCTCACA TCTGGTTCCT GAAGTCGCTG
CCGTCGCGTC TGGGCATGGT GCTCGACATG ACGCTGCGCG ACATCGAACG CGTGCTGTAC
TTCGAAGCGT TCGTGGTGCT GGAACCCGGC ATGACTCCGC TCAAGAAGAG CCAGATCATG
TCGGAAGACG ATTACATCGC GAAGTGCGAT GAATACGGTG AAGGCGAATT CGTGGCGATG
ATGGGTGCCG AGGGCATCCG TGAACTGCTG CGCGGCATCG ACATCGAGAA GCAGATCGAA
CAGATCCGCG CCGAGCTGCA GGCCACCGGT TCCGAAGCCA AGATCAAGAA GTTCGCCAAG
CGCCTGAAGG TGCTCGAGGC GTTCCAGCGC TCGGGCATCA AGCCCGAGTG GATGATCCTG
GAAGTGCTGC CGGTGCTGCC GCCCGAACTG CGTCCGCTGG TTCCGCTCGA TGGCGGCCGT
TTCGCCACGT CGGACCTGAA CGACCTGTAT CGTCGCGTCA TCAACCGTAA CAACCGTCTG
AAGCGCCTGC TGGAGCTGAA GGCTCCTGAA ATCATCGTGC GCAACGAAAA GCGCATGCTG
CAGGAAGCCG TCGACTCGCT GCTGGACAAC GGCCGCCGCG GTAAGGCGAT GACCGGTGCC
AACAAGCGTC CGCTGAAGTC GCTGGCCGAA ATGATCAAGG GTAAGGGCGG TCGTTTCCGT
CAGAACCTGC TGGGCAAGCG CGTGGACTAC TCGGGCCGTT CGGTCATCGT GGTGGGCCCG
ACGCTGAAGC TGCATCAGTG CGGTCTGCCC AAGCTGATGG CGCTCGAGCT GTTCAAGCCG
TTCATCTTCC ACAAGCTGGA AACGATGGGC ATCGCCACGA CGATCAAGGC TGCCAAGAAG
GAAGTGGAAA GCCAGACGCC GGTGGTGTGG GACATCCTGG AAGAGGTGAT CCGCGAGCAT
CCGGTGATGC TGAACCGCGC GCCGACGCTG CACCGTCTGG GCATCCAGGC GTTCGAGCCG
GTGCTGATCG AAGGCAAGGC AATCCAGCTC CACCCGCTGG TCTGCGCCGC GTTCAACGCC
GACTTCGACG GTGACCAGAT GGCCGTTCAC GTGCCGCTGT CGCTGGAAGC CCAGATGGAA
GCCCGCACGC TGATGCTGGC GTCGAACAAC GTGCTGTTCC CGGCCAACGG CGATCCGTCG
ATCGTGCCGT CGCAAGACGT GGTGCTGGGT CTGTACTACA CGACCCGCGA CAAGATCAAC
GGCAAGGGTG AAGGCATGAC CTTCGCTGAT ATCAGCGAAG TCATCCGCGC CTATGAGAAC
AAGGAAGTCG AGCTCGCATC GCGCGTGAAC GTCCGTATCA CCGAGTACGA AGTGGTGAAC
AAGGACGCCG ACGGCGACGC ACGTTTCGCA CCCAAGATCA CGCTGCAGGC CACCACGGTC
GGCCGCTCGA TCCTGTCCGA GATCCTGCCG AAGGGCCTGC CGTTCTCGGT GCTGAACAAG
CCGCTGAAGA AGAAGGAAAT CTCGCGCCTG ATCAACACCG CGTTCCGTAA GTGCGGTCTG
CGCGAAACGG TGATCTTCGC TGACAAGCTG CTGCAGTCGG GCTTCCGCCT GGCTACGCGC
GCCGGTATCT CGATCGCGAT CGACGACATG CTGGTGCCGC CGCAGAAGGA GAAGATCATC
TCCGACGCAG CCGCCAAGGT GAAGGAATAC GACAAGCAGT ACATGTCGGG TCTGGTGACG
GACCAGGAGC GTTACAACAA CGTCGTGGAC ATCTGGGGTG CTGCTGGTGA CCAGGTGGGC
AAGGCGATGA TGGAGCAGCT CCAGCACGAA GACGTGGTCG ACCGCACCGG CGCGACGGTC
AAGCAGGAAT CGTTCAACTC GATCTACATG ATGGCGGACT CGGGTGCTCG CGGTAGCGCG
GCCCAGATTC GTCAGCTGGC CGGTATGCGT GGCCTGATGG CCAAGCCGGA CGGCTCGATC
ATTGAAACGC CGATTACGGC GAACTTCCGT GAAGGCCTGA ACGTTCTGCA GTACTTCATC
TCGACCCACG GTGCACGTAA GGGTCTGGCG GATACGGCAC TGAAGACCGC GAACTCGGGT
TACCTGACCC GTCGTCTGGT CGACGTGACG CAGGATCTGG TGGTGGTGGA AGACGATTGC
GGTACCTCCA ACGGCGTGGC CATGAAGGCC CTGGTCGAAG GCGGTGAAGT GATCGAAGCC
CTGCGCGACC GTATTTTGGG CCGTGTGACC GTGGCTGACG TGGTGAATCC TGAAACCCAG
GAAACCGCGA TCGAGACCGG CACGCTGCTG GACGAAGACC TGGTCGAGCT GATCGACGCC
ATCGGCGTGG ACGAAGTGAA GGTGCGTACT CCGCTGTCGT GCGATACGCG CTACGGCCTG
TGCGGCAAGT GCTATGGCCG TGACCTCGGC CGCGGTGTGC TGGTGAACTC CGGCGAAGCG
GTGGGTGTGA TCGCTGCACA GTCGATCGGT GAGCCGGGTA CCCAGCTGAC CATGCGTACG
TTCCACATCG GTGGTGCGGC ATCGCGTGCG GCAGTGGCAT CGAGCGTGGA AGCGAAGGCA
ACCGGTACCG TGCGTTTCAC GGCGACCATG CGTTACGTTA CCAACACGAA GGGCGAGCTG
ATCGTCATTT CGCGTTCGGG CGAAGCGCTG ATCACCGACG ACCACGGCCG CGAGCGCGAG
CGCCACAAGA TCCCTTACGG CGCTACGCTG CTCGTGCAAG ACGGCCAGGC CATCAAGGCT
GGTACGCAGC TGGCCACGTG GGACGCCCTG ACGCGCCCGA TCGTGTCGGA GTACACCGGC
ACGACCAAGT TCGAGAACGT CGAAGAGGGT GTGACTGTCG CCAAGCAGAT GGACGAAGTC
ACCGGCCTGT CGACCCTCGT GGTGATCGAC GCCAAGCGCC GCACGGCTGC CACCAAGGGT
CTGCGCCCGC AGGTGAAGCT GCTCGACGCG AACAACCAGG AAGTGAAGAT CCCGGGCACG
GACCACTCCG TGACCATCGG CTTCCAGGTG GGCGCACTGA TTACCGTGAA GGACGGCCAG
CAGGTGCACG TGGGTGAAGT GCTCGCACGT ATCCCGACCG AGTCGCAGAA GACCCGTGAC
ATTACCGGTG GTCTGCCGCG AGTGGCTGAG CTGTTCGAAG CACGTTCGCC GAAGGACGCC
GCCGTGCTGG CGGAAGTCAC CGGTACCGTG TCGTTCGGCA AAGACACCAA GGGCAAGCAG
CGCCTGGTGA TTACGGACCT GGACGGCAAC GCCCACGAGT TCCTGATCGC CAAGGAAAAG
CAGGTGCTGG TGCACGACGG CCAGGTGGTG AACAAGGGCG AGATGATCGT GGAAGGTCCG
GCGGATCCGC ACGATATCCT GCGCCTGAAG GGCATCGAAG AGCTGGCGCA CTACATCGTG
GACGAAGTGC AGGACGTGTA CCGTCTGCAG GGCGTGAAGA TCAACGACAA GCACATCGAA
GTGATTGTTC GTCAGATGCT GCGCCGCGTG CAGATCGCCG ATGTGGGCGA CACCAAGTTC
ATCCCGGGTG AACAGGTGGA GCGTTCGGAA CTGCTCGACG AGAACGATCG TGTGATCGCC
GACGGCAAGC GTCCGGCTAC GCACGAGAAC CTGCTGCTGG GTATTACGAA GGCGTCGCTG
TCGACCGACA GCTTCATCTC GGCTGCATCG TTCCAGGAAA CGACGCGCGT GCTGACCGAG
GCCGCGATCA TGGGCAAGAC CGACGACCTG CGTGGTCTGA AGGAAAACGT GATCGTGGGT
CGTCTGATCC CGGCCGGTAC CGGCCTGGCC TACCACCGTG CCCGCAAGGC ACGCGAGGCT
GCCGAGCGCG AACGCGCCCA GGCGATCAGC GACGAAGAGC AATCGCTCTT CATCGAGCCG
CCGGTGGTGC AAGCGACCGA AGGCGAGGGC GACGCAGTCT GA
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| Protein sequence | MKALLDLFKQ VQQEEQFDAI KIGLASPEKI RSWSYGEVKK PETINYRTFK PERDGLFCAK
IFGPIKDYEC LCGKYKRLKH RGVICEKCGV EVTLAKVRRE RMGHIELAAP TAHIWFLKSL
PSRLGMVLDM TLRDIERVLY FEAFVVLEPG MTPLKKSQIM SEDDYIAKCD EYGEGEFVAM
MGAEGIRELL RGIDIEKQIE QIRAELQATG SEAKIKKFAK RLKVLEAFQR SGIKPEWMIL
EVLPVLPPEL RPLVPLDGGR FATSDLNDLY RRVINRNNRL KRLLELKAPE IIVRNEKRML
QEAVDSLLDN GRRGKAMTGA NKRPLKSLAE MIKGKGGRFR QNLLGKRVDY SGRSVIVVGP
TLKLHQCGLP KLMALELFKP FIFHKLETMG IATTIKAAKK EVESQTPVVW DILEEVIREH
PVMLNRAPTL HRLGIQAFEP VLIEGKAIQL HPLVCAAFNA DFDGDQMAVH VPLSLEAQME
ARTLMLASNN VLFPANGDPS IVPSQDVVLG LYYTTRDKIN GKGEGMTFAD ISEVIRAYEN
KEVELASRVN VRITEYEVVN KDADGDARFA PKITLQATTV GRSILSEILP KGLPFSVLNK
PLKKKEISRL INTAFRKCGL RETVIFADKL LQSGFRLATR AGISIAIDDM LVPPQKEKII
SDAAAKVKEY DKQYMSGLVT DQERYNNVVD IWGAAGDQVG KAMMEQLQHE DVVDRTGATV
KQESFNSIYM MADSGARGSA AQIRQLAGMR GLMAKPDGSI IETPITANFR EGLNVLQYFI
STHGARKGLA DTALKTANSG YLTRRLVDVT QDLVVVEDDC GTSNGVAMKA LVEGGEVIEA
LRDRILGRVT VADVVNPETQ ETAIETGTLL DEDLVELIDA IGVDEVKVRT PLSCDTRYGL
CGKCYGRDLG RGVLVNSGEA VGVIAAQSIG EPGTQLTMRT FHIGGAASRA AVASSVEAKA
TGTVRFTATM RYVTNTKGEL IVISRSGEAL ITDDHGRERE RHKIPYGATL LVQDGQAIKA
GTQLATWDAL TRPIVSEYTG TTKFENVEEG VTVAKQMDEV TGLSTLVVID AKRRTAATKG
LRPQVKLLDA NNQEVKIPGT DHSVTIGFQV GALITVKDGQ QVHVGEVLAR IPTESQKTRD
ITGGLPRVAE LFEARSPKDA AVLAEVTGTV SFGKDTKGKQ RLVITDLDGN AHEFLIAKEK
QVLVHDGQVV NKGEMIVEGP ADPHDILRLK GIEELAHYIV DEVQDVYRLQ GVKINDKHIE
VIVRQMLRRV QIADVGDTKF IPGEQVERSE LLDENDRVIA DGKRPATHEN LLLGITKASL
STDSFISAAS FQETTRVLTE AAIMGKTDDL RGLKENVIVG RLIPAGTGLA YHRARKAREA
AERERAQAIS DEEQSLFIEP PVVQATEGEG DAV
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